Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01772 ATGAGCAAAGTTTTGCTTCTTGTCCTTGTCATCTTCTACGGTGTTTTTCCCTCAAAAGGAATCAACACTGTTTCTGCAAGACCAAGTGCTGTTAACATTGGGGCAATTTTATCTTTCAACTCTACAATTGGAAGAGTAGCTAAAGTTGCCATACAAGCTGCAGTCGATGATATAAATTCTAACGCAACCATTCTCAACGGAACTAAGCTTAACATTTCAATGCTGGACACCAAATTATCCGTTGGATTCCTTGGAATCATTGATTCATTTTTGTTGATTGAGAGTAAAACCGCTGCAATAATTGGTCCCCAGTACTCAGTAATGGCACATGTGATTTCACACATAGCAAATGAGATGCAAGTGCCTCTACTTTCATTTGCAGCAACAGACCCTACACTGACTTCACTGCAGTTTCCATATTTTGTTAGGACAACACAGAGTGATCTGTACCAGATGGCTGCTGTGGCAGAAATTGTTGATCACTTTCAATGGAGAGACGTCATTGCCATGTACGTTGACGATGATCATGGAAGAAATGGTATAGCAGCCTTAGGCGAAAGGCTAGCAGAGAAACGTTGTAAACTATCATCTAAAGTACCCTTTAAGCCAGATAATATAACTCGGGAAGAAATAAACAATGCATTAGTTAAGGTAGCTTTAATGGAGTGTAGGGTAATAGTCATTCACATGTACACTTCTTCTGGTCTAGAAGTACTTCATCATGCGGCTCAGTCACTTGGCATGATGGGAAGTGGTTATGTGTGGATAGCCACAGATTGGCTTTCTACAGTACTAGATTCAGACCCATCCTTGTCAGCATCTCCAGTCATGAATGACATCCAAGGCGTTATCACCTTGCGCATGCATACGCCGGAATCAGACATCAAAACAAAATTTATTTCTAGATGGGACAAACTCTGCCGAAAAGAAGATCCTAATGAGGAACCATTTGGATTAAATATCTTTGGTCTCTACGCCTATGACACGGTTTGGGTGCTTGCTTCTGCACTGGATTCATTTTTTAAAGATGGGGGAACTTTGTCATTTTCAAATGATTCGCGTCTAAACATGTTGAGAGGGGACACCCTTAATCTTGATACTATGGGAGTCTTTGTTGATGGTGGCATGTTGCGTCAAAAAGTTTTAGAAGTGAACAGAACTGGTTTAGCAGGTCAAATGGTGTTTAATCGGGATGGAAACTTAGCGCATCCATCATATGAAATCATTAATGTGATAGGCACTGGAATCAGGAGGATTGGTTATTGGTCAGAAACCTCTGGCCTCCATACTGGGGAAGATCCTAATCACTCAAATTCGAGTGATGGACTGTATGGGGTCATTTGGCCAGGTCAAACAACCCAAACCCCACGTGGATGGGTCTTTTCCAGCAATGGAAGAAGCTTGAGAATTGGTGTGCCACTTAGAATTAGTTACCGTGAGTTTGTGTCAAGAATTGAGGGAACTGAGATGTTTGGTGGTTATTGCATAGATGTCTTTACTGCTGCTCTCAACTTGTTGCCTTATCCCGTACCATTCAAGTTCATGCCATTTGGTGATGGTAAAGGCAACCCGTCATATCGAGATCTTCTTCACATGATGACAATTGGTGTGGGCCTTCGATGCTGTGGTGGGAGACATTACCATTACTTCTAA 1653 0.418 MSKVLLLVLVIFYGVFPSKGINTVSARPSAVNIGAILSFNSTIGRVAKVAIQAAVDDINSNATILNGTKLNISMLDTKLSVGFLGIIDSFLLIESKTAAIIGPQYSVMAHVISHIANEMQVPLLSFAATDPTLTSLQFPYFVRTTQSDLYQMAAVAEIVDHFQWRDVIAMYVDDDHGRNGIAALGERLAEKRCKLSSKVPFKPDNITREEINNALVKVALMECRVIVIHMYTSSGLEVLHHAAQSLGMMGSGYVWIATDWLSTVLDSDPSLSASPVMNDIQGVITLRMHTPESDIKTKFISRWDKLCRKEDPNEEPFGLNIFGLYAYDTVWVLASALDSFFKDGGTLSFSNDSRLNMLRGDTLNLDTMGVFVDGGMLRQKVLEVNRTGLAGQMVFNRDGNLAHPSYEIINVIGTGIRRIGYWSETSGLHTGEDPNHSNSSDGLYGVIWPGQTTQTPRGWVFSSNGRSLRIGVPLRISYREFVSRIEGTEMFGGYCIDVFTAALNLLPYPVPFKFMPFGDGKGNPSYRDLLHMMTIGVGLRCCGGRHYHYF* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01772 550 CDD PBP1_GABAb_receptor_plant 32 428 IPR044440 -
Lapu3g01772 550 Gene3D - 49 403 - -
Lapu3g01772 550 Pfam Receptor family ligand binding region 49 413 IPR001828 -
Lapu3g01772 550 Gene3D - 147 428 - -
Lapu3g01772 550 Gene3D - 461 536 - -
Lapu3g01772 550 SUPERFAMILY Periplasmic binding protein-like I 26 459 IPR028082 -
Lapu3g01772 550 PANTHER OS06G0188250 PROTEIN 6 415 - -
Lapu3g01772 550 FunFam Glutamate receptor 147 305 - -
Lapu3g01772 550 SUPERFAMILY Periplasmic binding protein-like II 444 526 - -
Lapu3g01772 550 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 44 60 - -
Lapu3g01772 550 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Lapu3g01772 550 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 326 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01772 Lapu-Chr3 29994166 29999633 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01772 11 536 Ion Channels AT1G42540 53.247 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01772 K05387 - gmx:100789442 923.309