Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01762 ATGGGTCTCTGCTTCTCCTCCTCTTCCTCCCCTTCCCCCAACCCTCCTAACTACTCAGGTTCAGCGAGCAACGTGGGGTTCTCCGCCACCACGAGCAGCTTCGAGAAGAGCCAATTCTCGGAGATGGCGAGTGGGAGCATCGATAGCGAAGGGTCTCTTCCATTTCTGTCCCCTGATGGGCAGATTCTGGAACGGCCCAACCTGAAGGAGTTCAGTTTCGGGGACCTGAAATCGGCGACCAAGAGTTTCAAGGGGGACACATTGCTGGGTGAAGGTGGGTTTGGCAGAGTCTACAAGGGGTGGTTGGATGAAAAGAACCTCACCCCTGCCAAACCAGGCTCTGGCATGGTCGTCGCCATCAAAAAGTTGAACCCCGAAAGCACCCAAGGCTTTCAAGAGTGGAAGTCAGAAGTGAACTTTTTAGGAAGGCTTTCTCACCCCAACCTGGTCAAGTTATTGGGATACTGTTGGGACGAGGATGAACTTCTTCTTGTGTACGAGTTCATGCCTAAGGGAAGCTTGGAGAATCATCTCTTTAGAAGAAATCCTAACATAGAACCACTTTCATGGAACACCCGGCTTAAAATAGCTATTGGTGCAGCTCGTGGACTAGCTTTCCTGCACGCCTCCGAAAAGCAAGTCATATACAGAGATTTTAAGGCCTCAAATATACTTCTCGATGGGAATTACAATGCAAAAATATCAGATTTTGGCTTGGCTAAATTGGGACCATCTGGGGGACAATCACACGTAACTACCAGGGTCATGGGTACCTATGGTTATGCTGCTCCAGAATATATCGCAACAGGGCACTTGTATGTGAAGAGTGATGTGTATGGGTTTGGTGTAGTGCTTCTTGAAATACTGACAGGCATGAGGGCACTTGACACAAGACGCCCAACAGGGCAGCAGAACCTTGTTGAATGGACCAAGCCTTCTCTCTCTTCCAAAAGAAAGTTGAAAACCATAATGGATGGTAGGATAGAGGGTCAATATTCACCCAAGGCTGCATTACAAGCAGCACAACTTACTCTAAAATGCCTAGAGCATGACCCTAAACAACGTCCTTCAATGAAAGAAGTCCTTGATGGACTGGAAGCCATTGAAACTATCCATGAAAAATCCAAGGAATCCAAAACCCGCAATTCTCACCACATTTCTCAACAGCATCCCCGACAGAGAGTTGTGAGGGTATAA 1197 0.4787 MGLCFSSSSSPSPNPPNYSGSASNVGFSATTSSFEKSQFSEMASGSIDSEGSLPFLSPDGQILERPNLKEFSFGDLKSATKSFKGDTLLGEGGFGRVYKGWLDEKNLTPAKPGSGMVVAIKKLNPESTQGFQEWKSEVNFLGRLSHPNLVKLLGYCWDEDELLLVYEFMPKGSLENHLFRRNPNIEPLSWNTRLKIAIGAARGLAFLHASEKQVIYRDFKASNILLDGNYNAKISDFGLAKLGPSGGQSHVTTRVMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEILTGMRALDTRRPTGQQNLVEWTKPSLSSKRKLKTIMDGRIEGQYSPKAALQAAQLTLKCLEHDPKQRPSMKEVLDGLEAIETIHEKSKESKTRNSHHISQQHPRQRVVRV* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01762 398 FunFam Serine/threonine-protein kinase PBS1 169 384 - -
Lapu3g01762 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Lapu3g01762 398 SUPERFAMILY Protein kinase-like (PK-like) 62 366 IPR011009 -
Lapu3g01762 398 MobiDBLite consensus disorder prediction 1 23 - -
Lapu3g01762 398 Gene3D Phosphorylase Kinase; domain 1 67 168 - -
Lapu3g01762 398 Gene3D Transferase(Phosphotransferase) domain 1 169 394 - -
Lapu3g01762 398 ProSiteProfiles Protein kinase domain profile. 83 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01762 398 ProSitePatterns Protein kinases ATP-binding region signature. 89 122 IPR017441 GO:0005524
Lapu3g01762 398 Pfam Protein tyrosine and serine/threonine kinase 87 363 IPR001245 GO:0004672|GO:0006468
Lapu3g01762 398 PANTHER OS01G0588500 PROTEIN-RELATED 33 369 - -
Lapu3g01762 398 MobiDBLite consensus disorder prediction 374 398 - -
Lapu3g01762 398 FunFam Serine/threonine-protein kinase BIK1 52 168 - -
Lapu3g01762 398 CDD STKc_IRAK 89 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01762 Lapu-Chr3 29482772 29492177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01762 59 365 Glycoside Hydrolase AT3G07070 50.000 7.73e-104 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lapu3g01762 PK_Tyr_Ser-Thr 5.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01762 - - gmx:100794193 671.774