Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01741 ATGGCGGGGTTGTTCACATTAGGAGGCGGGCGAGGGAGTAACAACAACCAGCAAGACAACACTACCAACAACGAGATTCCAGCTGCGGAGACCCTATTCTGGTATAGCAAAAACGATGACGTTTCATCCTACCGAGGGTTCGAGCTATGGAACCAGCAGCAGGAGCAGCATGTGATGCCCCCGCATGCGCGTCCCCTCCTGCAGCGAGATCTTTACTCGTCCGGTGTGGGACCCAGCCGAGGTGTCTCCGATGATCACTCATCGTCTAGATCAGCGTTTGTGGCGATGCGCGCGGCGGAAGGTGGAATAAGCTGCCAGGACTGCGGGAACCAAGCCAAAAAAGATTGTCCTCACCTGCGGTGCAGAACATGCTGCAAGAGCCGGGGCTACGAGTGCCAAACCCATGTGAAGAGCACTTGGGTTCCCGCTTCCAAACGTCGCGAGCGTCAACAACAGCTCGCTGCGTTGCAAGAGCAGCACCAACAACAGAGAGACCTTTCCAAACGGCCAAGAGACCCAACTGCTTGCACTCGTTTGCCCTCGTCAGAAGGGTTAGAAGAAGGTCATTTTCCTTCTGTGGTGAGTTCTCCTGCTGAGTTCAGGTGCGTGAGGGTTAGCTGCGTGGAGGATGCTGATGACAGGTATGCATATCAAACGGCTGTGAACATTGGGGGACATGTGTTCAAAGGAATCCTTTATGACTATGGTCCTGAGAATAGCAATAATAATAACAGTAATAATAGTAATAATTACATGGCCGGGGAGACCTCTGCTGGTGTTGCTGGAGCTCAGCCCTTGAACCTCACTGCTTCTGGCGTTGTCTCTTCTTCTGGGGCACTTGTTGATCCTTCCTCCTTGTATTCAGCTCCAGTCAACACTTTCATGGGTGGCAGTGATTCATTCATGCACCACTTTTTGTGTGTTGACTAG 930 0.5226 MAGLFTLGGGRGSNNNQQDNTTNNEIPAAETLFWYSKNDDVSSYRGFELWNQQQEQHVMPPHARPLLQRDLYSSGVGPSRGVSDDHSSSRSAFVAMRAAEGGISCQDCGNQAKKDCPHLRCRTCCKSRGYECQTHVKSTWVPASKRRERQQQLAALQEQHQQQRDLSKRPRDPTACTRLPSSEGLEEGHFPSVVSSPAEFRCVRVSCVEDADDRYAYQTAVNIGGHVFKGILYDYGPENSNNNNSNNSNNYMAGETSAGVAGAQPLNLTASGVVSSSGALVDPSSLYSAPVNTFMGGSDSFMHHFLCVD* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01741 309 Pfam Domain of unknown function (DUF702) 102 238 - -
Lapu3g01741 309 MobiDBLite consensus disorder prediction 156 191 - -
Lapu3g01741 309 MobiDBLite consensus disorder prediction 9 23 - -
Lapu3g01741 309 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 292 IPR007818 GO:0003700|GO:0006355
Lapu3g01741 309 NCBIfam putative zinc finger domain, LRP1 type 104 146 IPR006510 -
Lapu3g01741 309 MobiDBLite consensus disorder prediction 1 23 - -
Lapu3g01741 309 Coils Coil 146 166 - -
Lapu3g01741 309 NCBIfam LRP1 C-terminal domain 189 237 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01741 Lapu-Chr3 28133561 28137989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01741 1 301 C2H2 Transcription Factor Family AT3G51060 43.836 1.97e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lapu3g01741 DUF702 3.7e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01741 - - gmx:100789129 433.721