Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01738 ATGTCAACGGAAGCGCCCAAGCGCCATCAATGGCAGTGGGAGAACGCCACCGCGGGCGCCGCCGCCGGATTCGCCACTGTCGCTGTTATGTATCCCCTCGATGTTGTCCGCACTAGGTTCCAAGTTAACGATGGTCGATTTTCTCATCTTCCTAGTTACAAGAACACCGCTCACGCCGTTTTCAGCATTGCTCGCTCTGAGGGATTAAGAGGGTTATATGCAGGCTTTCTTCCTGGTACTCTTGGGTCCACTATTTCATGGGGTTTATATTTCTTTTTCTATGATAAAGCCAAACAAAGATATGCAAGGAACGGGGAGGGGAAATTGAGTCCAGGTCTTCATCTTGCCTCGGCTGCTGAAGCAGGAGGTTTGGTTTGCCTGTGCACAAATCCTGTTTGGCTAGTAAAGACAAGATTGCAGCTTCAAACTCCGCTTCATCAGAGGCGACCTTACTCTGGGCTATATGATGCATTTAGGACCATAACGAGGGATGAAGGATTTAGTGCCCTTTACAGAGGCATTGTTCCTGGTCTATTTCTGCAGGTCTCTCATGGTGCTATTCAGTTCACAGCATATGAGGAGCTCCGTAAAGTTATTATTGATTTTAAGAGTAAGAGAAGTACATTACATAATCAAAATCCTGATAAATTGTTGAATTCTGTTGATTATGCTGTACTTGGAGCAACATCAAAACTAGCTGCAATACTGCTAACCTATCCATTTCAGGTTATGCGATCTCGCTTGCAGCAACGACCTAGTGGTGATGGGGTTCCAAGATATATGGATACATGTCATGTTGTGAAAGAAACTGTACGATTTGAAGGTGTTCGAGGTTTTTACAAAGGAATTACCGCAAACCTCTTGAAAAATGCTCCTGCTTCTTCCATAACATTTATTGTTTATGAAAATGTTATAAAATTGCTTAAACCGATTATAAGGAATGACTGA 948 0.4357 MSTEAPKRHQWQWENATAGAAAGFATVAVMYPLDVVRTRFQVNDGRFSHLPSYKNTAHAVFSIARSEGLRGLYAGFLPGTLGSTISWGLYFFFYDKAKQRYARNGEGKLSPGLHLASAAEAGGLVCLCTNPVWLVKTRLQLQTPLHQRRPYSGLYDAFRTITRDEGFSALYRGIVPGLFLQVSHGAIQFTAYEELRKVIIDFKSKRSTLHNQNPDKLLNSVDYAVLGATSKLAAILLTYPFQVMRSRLQQRPSGDGVPRYMDTCHVVKETVRFEGVRGFYKGITANLLKNAPASSITFIVYENVIKLLKPIIRND* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01738 315 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 12 312 IPR044712 GO:0006862|GO:0055085
Lapu3g01738 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 198 IPR018108 -
Lapu3g01738 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 100 IPR018108 -
Lapu3g01738 315 Gene3D Mitochondrial carrier domain 107 310 IPR023395 -
Lapu3g01738 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 218 307 IPR018108 -
Lapu3g01738 315 Gene3D Mitochondrial carrier domain 2 106 IPR023395 -
Lapu3g01738 315 PRINTS Mitochondrial carrier protein signature 25 43 IPR002067 GO:0055085
Lapu3g01738 315 PRINTS Mitochondrial carrier protein signature 73 91 IPR002067 GO:0055085
Lapu3g01738 315 FunFam Folate transporter 1, chloroplastic 106 313 - -
Lapu3g01738 315 FunFam folate transporter 1, chloroplastic isoform X1 1 105 - -
Lapu3g01738 315 Pfam Mitochondrial carrier protein 109 200 IPR018108 -
Lapu3g01738 315 Pfam Mitochondrial carrier protein 11 103 IPR018108 -
Lapu3g01738 315 Pfam Mitochondrial carrier protein 221 308 IPR018108 -
Lapu3g01738 315 SUPERFAMILY Mitochondrial carrier 12 303 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01738 Lapu-Chr3 27804396 27820932 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01738 32 308 Chloroplast and Mitochondria Gene Families AT2G47490 36.972 4.99e-45 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01738 K15115 - gmx:100809599 561.607