Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01727 ATGGGAGGCTTATTGCGCATGTTTGAGTTCAATCAGGGAAGGATGGCCAAGAAAATTCATGCCCATTTGAACAATAACGGTGATATGGAAACATCTGGAAATGGCATGGAGCTGCAAGTAGAAACCTCTCAGGTCCACTATGAAGAAGGAGAATTACCATACTCCTGTCAAGTAGAAGATGGCTGGTCAAAGAAAATTAGCTACACAAACGTGGATTCAGTGAAAAAACCGAACAAAGAGGGTTTTTCCAAACAATCAGGCGGCAGAAATAATGCCCCTAGCCTTGTGGCAAGGTTAATGGGGATAGACACCATGCCATTACCATTAGACACTAAATCTGTAGTTCCATTGGACGAAAGCACAGATGAAAATATGAAGAGGAAGTTTTCGAAGAAGGAAATGAATGGAAAGGGTTGGGTTGGTCGGGGTTCTTCAAACTTGAATTCTTTTAGCCGTATGGAATTTGATTCATTTTATCAACTCATGGATGATGACGAAGGTGGACATAGTTTTGGAGAACAAAGGCCAAGGGAACACCCTCAAGAAGAGGAACTCCAAAAATTCAAGAAAGAATTTGAAGCGTATCAAGCAACAAGGTTTAAGGAGTGGCCGAAGGCTGTTGACACTGGAAGTGGTTCTAGGAGAATGCTTTCTCAAGAGCACCTGAGCAAGGAGAACATGCAACATATTTCAAGTCCAAAGACAGATAGCCACTCATATAAGACAAAGCTACCAACTGGTGACCTGATGGAGTCAATCTTATCCAAGAAAAAAGAATCCTTTCCTTCAAGAAGTAAAACACTAAGTAGAGACTTTGAGGAGTCTTTAATGATGAAATCCAGAAGCAGATTATTAGATATATGCGCTTCTCCCACTCAGATAGTTATCTTGAAGCCTGGTTCTGAAAGGATTTGCAATTGCAACCATGAAGAGAATTGCATCAGTTTATCAGGCACTTTACATGAGAGAAAAGGTATAGAAGATTTTCTTGAGGAAGTGAGAGAGCGTTTGAAATGTGAACTCCAAGGGATTAGATCTGATGCTAACGAGGTCAGGGAAAGTACGACAAGAGATGCTGAACCTAATTTAGTCCGCTCAGAATCAACAAGATCATACAAGAGTAAAATGCAGCTCAATGGACCAAGTTCCCCAGAAGTTTTCAACATAGATACCAGGAGATTCTTATCAGAGAGGCTAAGAAATATTGTAAAAAATGAATTGCATTTGGACATTCCTGAAGTGGCTTGTTATTTAGACAATGACAGAGTTATACTAAAGCAAGATACTATAAAGGGTGCACATGACAAGAGCCAGTGGGGAGTTCTGAAAGAGAAAAAGGAATTACAAACATGTTCCTATAGACATAAAGTAGATGACAATGTATTGTTCAACAAGGAGTTGTCTCCTAGGAACCTTGAAAGATCCTTGTCTGCTCCTGCATCAGGAACATCATTTGGAAGGCTTCTTTTAGAGGACCGCCACATTTTAACGGGCGCGCTTATTCAGAGGAAGCTCGAAGCTGTTGAAGCAAGGCCTGTGGGTGTTCGTAAACAGAAGAAAGATGGATTTAATATTAAAGAAAAACTTTCCAATTTTAAATATACTCTTGGTCTAAGAGGGAAGCTGTTTGGCAGAAGGGTTCAGTCAAAAGTAGAATCACATGGCAGTGAATATGGTCCAATTTTGAGAGATGTCAGAAGTGGACCAACTGTTCTCATGAAATATGGTGAAAGACATGAGAACTCCACCGAGGTGCCTCCTAGTCCTGCATCCGTGTGCAGCTGTGCTGATGAAGAACATTGGAGACAAATTGGGTATTCAAGTCTAACATCAACTCCAGATGCATCTTCATTGGATGATATTTTTGTTCCCAAGGTTTTTAGAGATATCAGTTCTGGTTTAAATGAGCTAAAGAGGCAACTCAGTCAACTTGATTCTGAAGGCTTTGATGATTTCACTACAAAGCAGGTGCCGATTGAGCCTGAATTTGTTCAATTGGAGGATCCAGCAGAATCTTATGTAAGAGATCTGCTTGTTGCCTCTGGTCTGTACTTTGGTTCATGGGATAAATGTATTGGAAACTCAGTTTTTGAAGAAGTGGAAGAATCTCATAGGAAATTGGTGAAGGAGGATGAAAGATCCACAAAAGATGATAACAAGAATAAGTTAGAGCACAAGGTTTTGCTTGATTTATTGAATGAGGCACTTTCCATTGTTCTTGGACCACCTTTGACATTGTCTAGATCCAGAAGGAAACTAAGCAATTCCTCCTTGCAGCCTCCACCATGTGGAAAGGAACTACTAAAGTTAGTATGGGACATTGTCCGTGTTTCGTTACATCCAACGTCTAACACATCTCTTTATTCACTTGATAGTTTTGTGGCACAAGATCTAGGATCTATTTCCTGGTCTGGGCTAACAAATGATGAGATTGATACATTGGAAAGAGAGATGGCATGTACAATCACTGATGATTTGGTTGAAGAATTCACAAAGGATATGCTCTTGTAG 2511 0.4022 MGGLLRMFEFNQGRMAKKIHAHLNNNGDMETSGNGMELQVETSQVHYEEGELPYSCQVEDGWSKKISYTNVDSVKKPNKEGFSKQSGGRNNAPSLVARLMGIDTMPLPLDTKSVVPLDESTDENMKRKFSKKEMNGKGWVGRGSSNLNSFSRMEFDSFYQLMDDDEGGHSFGEQRPREHPQEEELQKFKKEFEAYQATRFKEWPKAVDTGSGSRRMLSQEHLSKENMQHISSPKTDSHSYKTKLPTGDLMESILSKKKESFPSRSKTLSRDFEESLMMKSRSRLLDICASPTQIVILKPGSERICNCNHEENCISLSGTLHERKGIEDFLEEVRERLKCELQGIRSDANEVRESTTRDAEPNLVRSESTRSYKSKMQLNGPSSPEVFNIDTRRFLSERLRNIVKNELHLDIPEVACYLDNDRVILKQDTIKGAHDKSQWGVLKEKKELQTCSYRHKVDDNVLFNKELSPRNLERSLSAPASGTSFGRLLLEDRHILTGALIQRKLEAVEARPVGVRKQKKDGFNIKEKLSNFKYTLGLRGKLFGRRVQSKVESHGSEYGPILRDVRSGPTVLMKYGERHENSTEVPPSPASVCSCADEEHWRQIGYSSLTSTPDASSLDDIFVPKVFRDISSGLNELKRQLSQLDSEGFDDFTTKQVPIEPEFVQLEDPAESYVRDLLVASGLYFGSWDKCIGNSVFEEVEESHRKLVKEDERSTKDDNKNKLEHKVLLDLLNEALSIVLGPPLTLSRSRRKLSNSSLQPPPCGKELLKLVWDIVRVSLHPTSNTSLYSLDSFVAQDLGSISWSGLTNDEIDTLEREMACTITDDLVEEFTKDMLL* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01727 836 MobiDBLite consensus disorder prediction 164 183 - -
Lapu3g01727 836 Coils Coil 334 354 - -
Lapu3g01727 836 MobiDBLite consensus disorder prediction 365 381 - -
Lapu3g01727 836 Pfam Domain of unknown function (DUF4378) 672 829 IPR025486 -
Lapu3g01727 836 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 835 - -
Lapu3g01727 836 MobiDBLite consensus disorder prediction 350 364 - -
Lapu3g01727 836 Pfam DUF761-associated sequence motif 92 106 IPR032795 -
Lapu3g01727 836 MobiDBLite consensus disorder prediction 350 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01727 Lapu-Chr3 27291847 27296746 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01727 74 834 TRM (TON1 Recruiting Motif) Superfamily AT2G17550 36.196 8.15e-119 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01727 - - gmx:100810825 1310.82