Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01719 ATGGAGTTTGCTAGTTTCCATCTTCAGCATCAGCTTCAAGAAGAATCTGCTCAGTGCATAACTTCAGCAACCCCACCACCTGACTCTAAACCTTCTATTGCCTCTCATCAATCATGGATCCCAAGCAACATATACAATGGTTGTAACAGTGGCTTTCTAACTGAGAGCTTTACAAATTCAAGAGAACTACAGCACAAGCACGCCATGACTGATTCACTTAGAATTTCAACAAGGCAAGCCTTTGGTTTTCACAATGGAAAAAGCCTCGTTGAACAGCCAGTTAGTGATCTCTTTCCAGCAAGAATCAAAGGTGAAATGATCAACACCTCCATGAAGGCTCTAGAGGAACCATGCTCACTAATCCCAATCCATGAACCACGATATCCTCCTAGTTTCTTGTCTAGTCTTGGTGTAACTGAGTTTTTTTCTTCGGAGAATGTCTTTCATAATGACAAGCCTATTGATGGAGGGACCATGAGCAAGAGATATAACAACTTCGGCGATGTTACCTTAATTTCGACTTTACCAACCCTAGATATGACCTCTTCCATGGTTTCATGTTCTTTGGGTTTAAATCCTAAAATGTTTGATCTGCATACAAGTTATAGTGAGAGTTCTGAAATTCAATCTTGCTATGATACTTTTGGTCTTAACGAGAGCATAGCTTTGTGCAACAGCGACATGCATGGCCGCGAAAATAGTCCGTCAAATACCTCAAAAATTTCATCATTTATAAGTGAAATTGCAACGACGAAAAGGCCTAGCAATTGTTCTCTAGCAAAAGAATCTGAGGCAAAAGCTAAGAAGTCAAGGCCATCATCATGCCCTCCCCTGAAGATAAGAAAGGAAAAATTGGGTGATAGGATTCAAACTCTTCAAAGATTAGTGGCACCTTTCGGGAAGACCAGTACAGCCTCTGTCTTAAGTGAAGCCATTGGCTACATCCATTTCCTTCACCAACAAATCCAGACTTTGAGCATTCCTTACATGAAATCCACGCAAATCAATAGAATGTTACAGGATACAAATAAAGATAGCAAAGAACTGAAGCCAGATCTTAGAAGCAGAGGCTTGTGCCTTGTGCCCCTTTCTTATGCATCATGTATTCATCGTTGTGTTTAA 1122 0.4055 MEFASFHLQHQLQEESAQCITSATPPPDSKPSIASHQSWIPSNIYNGCNSGFLTESFTNSRELQHKHAMTDSLRISTRQAFGFHNGKSLVEQPVSDLFPARIKGEMINTSMKALEEPCSLIPIHEPRYPPSFLSSLGVTEFFSSENVFHNDKPIDGGTMSKRYNNFGDVTLISTLPTLDMTSSMVSCSLGLNPKMFDLHTSYSESSEIQSCYDTFGLNESIALCNSDMHGRENSPSNTSKISSFISEIATTKRPSNCSLAKESEAKAKKSRPSSCPPLKIRKEKLGDRIQTLQRLVAPFGKTSTASVLSEAIGYIHFLHQQIQTLSIPYMKSTQINRMLQDTNKDSKELKPDLRSRGLCLVPLSYASCIHRCV* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01719 373 Gene3D - 279 352 IPR036638 GO:0046983
Lapu3g01719 373 MobiDBLite consensus disorder prediction 256 279 - -
Lapu3g01719 373 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 318 IPR011598 GO:0046983
Lapu3g01719 373 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 130 365 - -
Lapu3g01719 373 CDD bHLH_AtbHLH_like 281 326 IPR045239 -
Lapu3g01719 373 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 279 334 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01719 Lapu-Chr3 27048874 27052531 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01719 234 364 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 49.640 3.82e-33 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01719 - - vum:124832810 654.055