Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01714 ATGGCGATGGCTTCACCCTCCTCAATCTTCTCTGCTTACGCTTCCATGACAGCTTCCATCATGCTTCTGCGTTCAATAACCAACGACCTCATTCCTCAACCAATTCGTGGATACCTTATCAACACCTTCCGCTACTTCTTCAAGCCTCGCTCCAACACTCTCATTCTCACCATCGAAGAGTACTCCAGCGGCATAGCGCGCAACCATCTCTACGATGCGGCAGAGGTTTACCTGTCCACAAAAATCACCCCCCAGAATGAGAGACTCAGCGTCAGCAAGAGTCCAAAGGAGAAGAAACTCTCCATAAGACTTGAAAAGGGTGAAGAGCTAGTTGATTGGTTTAATGGGGTTAAGCTCAACTGGAAACTAATCTGCTCGGAGTTCGAGAAGGGCAATGGCTCCAATGATCACACCAGAAACAGCTCCACGAGAACAGAAAAGAAGTACTTTGAGCTAAGCTTTGAGAAGAAGCACAAGGAGATGGTGGTGGAAACTTACTTGCCTTTCGTTCTAGACAAAGAGAAGGAGATGAAGGACGAGGAGAGGGTGTTGAAGATGCACACTCTCAACACTTTCTATGGTCATGGAGGGTTCAAGTGGGATTCCATTAACTTGGACCACCCTTCAACGTTTGAGACCGTGGCTATGGAGGCAGAGATGAAGAACTACATAATGGAGGATTTGAACAGGTTTTTGAGGAGGAGGGAGTTTTATAGGAAAGTTGGGAGGGCGTGGAAACGAGGGTACTTGTTGTATGGCCCTCCGGGAACAGGAAAATCCAGCTTGATCGCAGCCATGGCGAATTACTTGAAGTTCGATATCTATGATCTCCAACTTGACAACTTAGTCACTGATTCTGACCTCAGAAAGTTGTTGCTGGCCACTGCAAATAGGTCTATTCTTGTGATTGAAGACATTGATTGTAGTGTGGATCTGCCTGGGCGCAGGCATGGAGATGGTGGCAGGCATGGAGATGGACGCAAACAACCTAATGTGCAGTTGAGTTTGTGCGGATTACTGAACTTCATAGACGGGTTATGGTCGAGTTGTGGAGACGAGAGAATCATCATACTCACCACCAACCACAAGGAGAGGCTAGACCCGGCACTGTTGAGGCCTGGAAGAATGGACATGCACATTCACATGTCTTATTGCTCCTACCACGGCTTCAAGGTTTTGGCTTCAAACTACTTGAACATTTCTTCGGATCATCGCCTCTTTGGGGAGATTGGAGGCCTGATAGAGGACACGCACATAACCCCAGCACAAGTGGCAGAGGAATTGATGAAGAGCGAAGATGCTGAGGTTGCACTAGAAGGATTTGTAAAGGTGCTTAAGCGAAAGAAGATGGAAGGTGATGTGTATGAGAATGATGGTTCAGATAAAACAGAACTTAACCAATCTAAAAGGTCAAAAGTTAGTTGCAAGCAGAAAATACCAGTTTCTACCAGCAAGAGAAGAAATAGTACGGTTACTCAGAGAAGGACTAGAGGACGTAGTTTGCAATAA 1509 0.4632 MAMASPSSIFSAYASMTASIMLLRSITNDLIPQPIRGYLINTFRYFFKPRSNTLILTIEEYSSGIARNHLYDAAEVYLSTKITPQNERLSVSKSPKEKKLSIRLEKGEELVDWFNGVKLNWKLICSEFEKGNGSNDHTRNSSTRTEKKYFELSFEKKHKEMVVETYLPFVLDKEKEMKDEERVLKMHTLNTFYGHGGFKWDSINLDHPSTFETVAMEAEMKNYIMEDLNRFLRRREFYRKVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDLQLDNLVTDSDLRKLLLATANRSILVIEDIDCSVDLPGRRHGDGGRHGDGRKQPNVQLSLCGLLNFIDGLWSSCGDERIIILTTNHKERLDPALLRPGRMDMHIHMSYCSYHGFKVLASNYLNISSDHRLFGEIGGLIEDTHITPAQVAEELMKSEDAEVALEGFVKVLKRKKMEGDVYENDGSDKTELNQSKRSKVSCKQKIPVSTSKRRNSTVTQRRTRGRSLQ* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01714 502 Gene3D - 199 380 IPR027417 -
Lapu3g01714 502 Pfam Domain associated at C-terminal with AAA 31 124 IPR025753 -
Lapu3g01714 502 Gene3D - 381 453 - -
Lapu3g01714 502 ProSitePatterns AAA-protein family signature. 354 372 IPR003960 GO:0005524|GO:0016887
Lapu3g01714 502 SMART AAA_5 245 386 IPR003593 GO:0016887
Lapu3g01714 502 PANTHER BCS1 AAA-TYPE ATPASE 11 450 - -
Lapu3g01714 502 MobiDBLite consensus disorder prediction 453 471 - -
Lapu3g01714 502 MobiDBLite consensus disorder prediction 453 502 - -
Lapu3g01714 502 Pfam ATPase family associated with various cellular activities (AAA) 250 383 IPR003959 GO:0005524|GO:0016887
Lapu3g01714 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 434 IPR027417 -
Lapu3g01714 502 MobiDBLite consensus disorder prediction 472 502 - -
Lapu3g01714 502 CDD RecA-like_BCS1 224 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01714 Lapu-Chr3 26999159 27001515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01714 211 382 Calmodulin-binding Proteins AT3G56690 27.778 3.69e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01714 - - gmx:100812263 874.389