Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01702 ATGGACATGAGAGAGCAGGATAAGGTAATAGAGATGCCTAGCACTTTGGGTTATAACCTGCCCAATAGAAATTCATCTTCTTCCAAGCTTTCATCACCAATAGGGGAAAGAAGTGACCAAGCTCCTCAATCTCACACATTGGTTTTCAGTGATCCACCCCTAACAACTTCACATCATCACCTTCCTCCCAACCCCCCTAATTCTCTTCCACCAAACCCTCTTCAACTTCCACACCCTCACAGACCCAGAAGAGATCCAGATCCAAGTCCTATTTCTCCTCCTATCGTAACCACCCCAAGAACACAACCACACTCAGCAGGAACTTTCACAGCAACTTTCAGATACCGAGAATGTCTGAAGAATCATGCTGCAAGCATGGGGGCTCATGTCACAGATGGGTGTGGGGAGTTCATGCCAAATGGAGAAGAGGGCACCCCAGAATCCTTCAAGTGTGCAGCTTGTGAGTGCCACCGCAATTTTCACAGAAAAGAACCTGAAGGCGAGTCATCACAACATGTTCTCAACTACCACCTCACTTACCCCAACAAAACCAATAGAAACATTCTTATTCATTCTCCACAATCTCATCTTCAGTTACCTACACACCATCATCACGGGATGGCAACCCCTTCAGGTGGGCCGGTTCAGCCCGCGATGTTGGGCTTTGGGGGGGGGCCAGCTGAGTCCTCAAGCGAAGATCTCAACATGTTTCAGACCGATGATGCAGGGCAATTGTTATCAGTACAGCCACCACTGTCATCATCCAAGAAGAGGTTCAGGACCAAGTTCTCACAGCAACAAAAGGATAAGATGATGGAGTTCGCTGAGAAACTGGGGTGGAAGATCCAGAAACAAGATGAACAGGAACTGCTTCAGTTTTGCGCACAGGTTGGTGTAAAAAGACAGGTTTTCAAGGTTTGGATGCACAACAGCAAGCAAGCCATGAAGAAGAAGCAAATGTAA 963 0.4725 MDMREQDKVIEMPSTLGYNLPNRNSSSSKLSSPIGERSDQAPQSHTLVFSDPPLTTSHHHLPPNPPNSLPPNPLQLPHPHRPRRDPDPSPISPPIVTTPRTQPHSAGTFTATFRYRECLKNHAASMGAHVTDGCGEFMPNGEEGTPESFKCAACECHRNFHRKEPEGESSQHVLNYHLTYPNKTNRNILIHSPQSHLQLPTHHHHGMATPSGGPVQPAMLGFGGGPAESSSEDLNMFQTDDAGQLLSVQPPLSSSKKRFRTKFSQQQKDKMMEFAEKLGWKIQKQDEQELLQFCAQVGVKRQVFKVWMHNSKQAMKKKQM* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01702 320 Gene3D - 246 317 - -
Lapu3g01702 320 MobiDBLite consensus disorder prediction 17 53 - -
Lapu3g01702 320 Pfam ZF-HD protein dimerisation region 113 165 IPR006456 -
Lapu3g01702 320 MobiDBLite consensus disorder prediction 1 106 - -
Lapu3g01702 320 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 114 164 IPR006456 -
Lapu3g01702 320 NCBIfam homeobox domain, ZF-HD class 256 313 IPR006455 -
Lapu3g01702 320 SUPERFAMILY Homeodomain-like 250 317 IPR009057 -
Lapu3g01702 320 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 115 164 IPR006456 -
Lapu3g01702 320 FunFam Zinc-finger homeodomain protein 2 247 317 - -
Lapu3g01702 320 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 102 313 - -
Lapu3g01702 320 MobiDBLite consensus disorder prediction 58 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01702 Lapu-Chr3 26322079 26324033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01702 58 320 ZF-HD Transcription Factor Family AT2G18350 46.715 2.07e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lapu3g01702 ZF-HD_dimer 2.4e-29 No_clan