Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01698 ATGGGAACTGATGGCAGTGAACTGGTAGAGACATTACCAAATCCTTGCTCTTTTAAGGTGCATCGTGAAATGTGCACGGAACTCAGGAAATTAGTTTCTAGAATCTTGCGGATAATTCCACGTATAGAAGAAGCGCGCCCTTGCGGAATGCAGGCTCTGTGTTCGCTCAACAGCGCAATTGATAACGCCTCACAACTCCTGATATACTGCACTGAATCTAGTAAACTCTACCTGGCAATGACAGGGGATTCCATACTCTCAAAATGCCAGAAGGCAAGAAAATCGACAGTAAAAAACTTAGTCCAGATTCTGAATATGGTTCCGGTGATGTTGGCTGCAGAGATTTCTCGACTAATTGGTGATCTTGAGTGTGTTACATTTGTCCTTGACTCAGTTGAAGAAGCAGCTGGGAAGGTTGTGAAACAATTGCTCCAGCAAGATTCTTCAACATCAGATGAAGATTCAATGGAAGAATCTGAAACAAAACATTTTCAGTTTGTAGCAGCAAGACTTAGTATTACATCCTCATCGGCCATCTTAATAGAGAGACGATCTATTCAGAAGTTGCTAAAAAAAGTCAAACCAAATGAACAGACAAAAGAGATTGTCTTGAAAAATCTTTTGTATCTCCTGCTAAAGCACAAAAAATCAATCACCGGAGAACAAATTGAAGTCTATTTTCAAAGAGAAGGACCAATCACAACTGAGAACTCAGTTCACGAGTCACAAAGCACCCATTATGTCAAGTCAGACCCATACTTGAACCATGATCAGTATAGAACTCATGCCAATGAGTTGGGCAGACTTACACCTCCTGAGGAATATACATGCCCAATATCTTTAAGGTTGATGTATGACCCTGTTGTCATTGCTTCAGGAGAAACATATGAAAGGATGTGGATACAAAAGTGGTTTGATGAGGGTAATACCATATGCCCAAAAACTAAAAAGAAACTGGATCATATGTCATTTACTCCAAATGTTGCCTTCAAGGACCTAATATTAAAGTGGTGTGAAACTAACGGAGTCTCCATTCCTGACCCGAGTAGACAAGTGCAACATTTGCACTCATGGGAAGCTTCATCCAATTCCATAAAGAGTTTTGGAAGTTCTTTGTATGATTTAAACTTCCAAATGGATTTTAGTAACATGTCAATTGGATCTTTAGAGACCAGTTATAATTCAGATTTCTCTCATGCTAATGCCGATCATAGCTTAGATTTGATATTGAACAAGACCAGTGCCAATTCTGGCAGACATCAGTCACGTGCACGGATTCATGACTTTGATGTGATGCGTTTGTCTAAACTCCATGAACGTCAATGGGAATCTCAATGCCAACTCATTGAAGACATGCATATAGATTTCAAACGCAATAAGCATACTTTTTGCTCTGTGCCATCTGAGAATTTCATTGACCCACTGACGAGATTTCTGAGCACTGCGTGTGAGAGGCATGATGTAAAAGCTCTGAGATCTGGAACTAAATTGCTATTGGAATTTATGAAGTGCTGCAGCAATGGTATGACAAATTTAACTGAAGATACATGCACTATGTTGGTAAGTCTTCTTGACACAGAAGTGATTGGTGAAGCTCTTACCATAATGGAAGAGCTGAAAGGAAATTGGTATGAGAAAGCTAAGATTGCAGCTTCCTTTATACTCAATTCTGTTTCAAAGATCCTTGATTTGGGTAGCAAAGAGTTCCAACGAAAAGCTATTAAAATAATGCATAATTTTTCATCCAATAGTCAAATTTGTCCCTACATGGTATCTCTCGGGTGCATCCCAAAATTACTGTCATTTTTTGAAGACAAAACGCTTTTGAGAGACTGTATACATATTTTGAAAAACCTTTGTGACACTGAAGAGGGTAGGGTTACTGTGGTTGAAACAAAAGGATGCATATATTATGTTGTCGAAATACTTGGGACTGGCAGTGATGAGGAAAAAGAACCTGCACTGGCTATTCTACTCTCTTTATGCTCTCAACGTATGGAATACTGTCAGTTGGTTATGGATGAGGGCATTATTCCTTCTCTTGTCTACATCTCCAATTCAGGAAGTGATATGGCAAAGGCTTATGCACTTGAACTGCTCCGTCTTTTGAGGGAAGATAGCGAGTTTGAGAATGAAGACTGTTATGAGCCAAATCTCAATGCCTCTCAAGAATCTACCAGTCGCTGTCAAGAAAAGAAACCTTCAATCTTGAAGAGACTGTCGGTCTTCTCAAAATCCAGTTCAGTTGCACCAAAAAACAAGAGATTACAATGA 2274 0.394 MGTDGSELVETLPNPCSFKVHREMCTELRKLVSRILRIIPRIEEARPCGMQALCSLNSAIDNASQLLIYCTESSKLYLAMTGDSILSKCQKARKSTVKNLVQILNMVPVMLAAEISRLIGDLECVTFVLDSVEEAAGKVVKQLLQQDSSTSDEDSMEESETKHFQFVAARLSITSSSAILIERRSIQKLLKKVKPNEQTKEIVLKNLLYLLLKHKKSITGEQIEVYFQREGPITTENSVHESQSTHYVKSDPYLNHDQYRTHANELGRLTPPEEYTCPISLRLMYDPVVIASGETYERMWIQKWFDEGNTICPKTKKKLDHMSFTPNVAFKDLILKWCETNGVSIPDPSRQVQHLHSWEASSNSIKSFGSSLYDLNFQMDFSNMSIGSLETSYNSDFSHANADHSLDLILNKTSANSGRHQSRARIHDFDVMRLSKLHERQWESQCQLIEDMHIDFKRNKHTFCSVPSENFIDPLTRFLSTACERHDVKALRSGTKLLLEFMKCCSNGMTNLTEDTCTMLVSLLDTEVIGEALTIMEELKGNWYEKAKIAASFILNSVSKILDLGSKEFQRKAIKIMHNFSSNSQICPYMVSLGCIPKLLSFFEDKTLLRDCIHILKNLCDTEEGRVTVVETKGCIYYVVEILGTGSDEEKEPALAILLSLCSQRMEYCQLVMDEGIIPSLVYISNSGSDMAKAYALELLRLLREDSEFENEDCYEPNLNASQESTSRCQEKKPSILKRLSVFSKSSSVAPKNKRLQ* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01698 757 SMART arm_5 665 705 IPR000225 GO:0005515
Lapu3g01698 757 SMART arm_5 583 621 IPR000225 GO:0005515
Lapu3g01698 757 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 345 IPR013083 -
Lapu3g01698 757 PANTHER U BOX DOMAIN-CONTAINING 23 705 - -
Lapu3g01698 757 SUPERFAMILY RING/U-box 266 348 - -
Lapu3g01698 757 Pfam U-box domain 272 341 IPR003613 GO:0004842|GO:0016567
Lapu3g01698 757 SUPERFAMILY ARM repeat 437 709 IPR016024 -
Lapu3g01698 757 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Lapu3g01698 757 FunFam RING-type E3 ubiquitin transferase 270 342 - -
Lapu3g01698 757 CDD RING-Ubox_PUB 272 321 IPR045210 -
Lapu3g01698 757 Gene3D - 453 722 IPR011989 -
Lapu3g01698 757 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01698 Lapu-Chr3 26155838 26161602 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01698 15 728 U-box Gene Family AT4G36550 35.705 1.31e-129 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01698 - - gmx:100798951 1171.76