Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01660 ATGGATTCAGTGCTAATCAGGACTTACGACGATTCAAACGTAGGAAACATACAACCTGAGCGTTACTTTGATAGTGGTAATGTTTCTGAGATAAAGATTTTAGTGTACAGTAGGAAGGAACTAAAGTCTGCAGAGGCCAATCAAAATGAACATCAAACTCCACTTGCTTGTGTTCCTCTGCTTGAAGAGGGAGATTCTTTAGCCCTTGATTATCATACCCTCAGTGACGAGATTACTAATAGTAATGCAAATTACAGCAAGCCTGAGTATAAGAGGAAGAAATTTTTAGATCTAGAAAACGAGGAAGGTTCTGATCCTGGATGGGAAAACTTAAATTCCAATATAAACTCCAAAAAAGAAAATGCTAGAAGAAACTTAAATACAACTGCCTACAAGGAAATGATTGATTCATACTTAAAGGAGGGTACTAATGGAACTCCAACAAAAGAAGAACCAAGTGTAATGGACCTGTGGAAGAAAATAAACAACTTGGAGAAGAAGAATGAAACAGAAATACCTCAAAGAGAGGAAGAGGAACAAATCTCTCAGATGGATATGCTGTGGGGAGAAATGGAAATGGCATTGGCATCATGTCATATTGAAGAAATGAAAATGTATTACCCAAGGAGACAACAGGAGGAAAAGAAATGCAGTGAAAAAGAAACTGATAAAGATGATGATTTCGGTCAGTTCTCAGCTGACCTTATTTCTATAGAACATGACAACGTTTGGAAGTTGATTCCTGAACTTAGAGAAAAGATGCATGTCCACCAAAAGAAAGCATTCGAATTTTTTTGGCAAAATATTGGTGGGTCTATAGAGCCATCACTAATGGATGCAGAATCCAAAAGAAGAGGTGGTTGTGTCATATCTCATTTCCTGGATCGGCTATTTAAAGCTATTTCCAGGGATGAAACCTCTTGTCCTTGCTCCAACAACCACTCTTCACACTTGGCACAAAGAATTCGTCAAATGGAATATTTCTCTATGCCAGTGTATCTGATTCATGGACGTGGTGGACCTCAGAAAGATGATATGCAAAATTCAATTGTTCTTCGTAGTTTTTCAAAAGCAAATGAAAGTGTCAAACATATTTTGAACTGCTTGGACAAGATAAAAAAGTATCAAGCACACCCAGGTGTTTTGGTCATGAGTTATTCCTCATTCTTGGCATTAATGAGAGAGGAATCAGAGTTTACACCAAGAAAGTATATGGCTAAAACATTGAGGGAAGGACCTGGGATCCTGATACTCGATGAAGGTCACAATCCTAGAAGCACTAAATCAAGGTTGAGGAAAGTGTTGATGAAAGTGAAAACAGATATAAGAATACTACTTTCTGGTACATTATTTCAGAATAACTTCTGTGAATATTTTAACACACTTTGCTTGGCAAGACCGAAGTTTATTTACGAAGTGCTGAATGAGTTAGACCCAAATGATAGAAGGAAAAAAAAACGCAAGAGAAGACACGCCATTTGCTAG 1485 0.3744 MDSVLIRTYDDSNVGNIQPERYFDSGNVSEIKILVYSRKELKSAEANQNEHQTPLACVPLLEEGDSLALDYHTLSDEITNSNANYSKPEYKRKKFLDLENEEGSDPGWENLNSNINSKKENARRNLNTTAYKEMIDSYLKEGTNGTPTKEEPSVMDLWKKINNLEKKNETEIPQREEEEQISQMDMLWGEMEMALASCHIEEMKMYYPRRQQEEKKCSEKETDKDDDFGQFSADLISIEHDNVWKLIPELREKMHVHQKKAFEFFWQNIGGSIEPSLMDAESKRRGGCVISHFLDRLFKAISRDETSCPCSNNHSSHLAQRIRQMEYFSMPVYLIHGRGGPQKDDMQNSIVLRSFSKANESVKHILNCLDKIKKYQAHPGVLVMSYSSFLALMREESEFTPRKYMAKTLREGPGILILDEGHNPRSTKSRLRKVLMKVKTDIRILLSGTLFQNNFCEYFNTLCLARPKFIYEVLNELDPNDRRKKKRKRRHAIC* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01660 494 Gene3D - 343 492 IPR038718 -
Lapu3g01660 494 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 360 468 IPR014001 -
Lapu3g01660 494 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 53 292 IPR044567 GO:0080188
Lapu3g01660 494 Pfam SNF2-related domain 332 468 IPR000330 GO:0005524|GO:0140658
Lapu3g01660 494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 471 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01660 Lapu-Chr3 24078245 24081285 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu3g01660 SNF2_N 1.8e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01660 K10875 - gmx:100781856 486.878