LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu3g01640	ATGGGAATGGGTTCCTCATCGCCAGGCCTTTCTCTCACACTCAACGGTGGTACCTTCACTTACGAGGAGCTTGCAGCTGCCACCAAAGGATTTGCCAATGACCAAATTATTGGACAAGGTGGCTTTGGTTATGTTCATAAGGGAGTTTTACCTAATGGAAAGGAGGTGGCTGTTAAGAGTCTAAAAGCAGGTAGTGGACAAGGAGAACGAGAGTTCCAAGCTGAGATCGATATCATTAGTCGAGTTCATCATCGTCATCTTGTGTCACTTGTTGGATATTGCATTTGTGGAGGCCAAAGAATGTTGGTCTATGAATTTGTTCCCAACTCAACTTTGGAACATCACCTTCATGGAAAAGGTATGCCTACCATGGATTGGCCTACTAGAATGCGAATTGCACTTGGATCTGCCAAAGGGCTTGCCTACCTTCATGAAGATTGTAGTCCTCGAATTATCCATCGTGACATTAAAGCTTCTAACGTTCTTCTTGATGATAGCTTTGAAGCAAAGGTGTCTGATTTTGGACTCGCAAAGTTGACCTCTGATACTAATACACATGTATCAACTCGTGTCATGGGAACATTCGGGTATTTGGCCCCAGAATACGCATCAAGTGGAAAACTGACAGAGAAGTCTGATGTTTTCTCATTTGGGGTCATGCTATTGGAACTCATAACCGGGAAACGACCTGTAGATTCATCAAATGTCATGGAAGACAGTTTAGTGGATTGGGCTCGACCACTCCTAAATAAAGGATTGGAGGATGGTAACTTTGGAGAGTTAGTGGATCCATTTTTGGAAGGCAATTACAATACTCAGGAAATGACAAGAATGGCAGCTTGTGCAGCTGCAAGCATTCGTCATTCTGCCAGGAAGCGTTCAAAAATGAGTCAGATTGTGAGAGCACTGGAAGGAGATGTGTCATTGGAAGACTTGAAAGATGGAATGAAACTTGCAGGGAATGGGAATGGGAATAACAGTGCATATACTTCATCTGGAAGCTCAGAATATGATACCATGCAATACAATGCCGATATGGCTAAGTTCAGAAAGGCAATCATGTCGAGCCAAGAATTTAATGACAGTGGTGAGCTTACCAGTAAGGAGATGAGTTATCATTAA	1122	0.4296	MGMGSSSPGLSLTLNGGTFTYEELAAATKGFANDQIIGQGGFGYVHKGVLPNGKEVAVKSLKAGSGQGEREFQAEIDIISRVHHRHLVSLVGYCICGGQRMLVYEFVPNSTLEHHLHGKGMPTMDWPTRMRIALGSAKGLAYLHEDCSPRIIHRDIKASNVLLDDSFEAKVSDFGLAKLTSDTNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDSSNVMEDSLVDWARPLLNKGLEDGNFGELVDPFLEGNYNTQEMTRMAACAAASIRHSARKRSKMSQIVRALEGDVSLEDLKDGMKLAGNGNGNNSAYTSSGSSEYDTMQYNADMAKFRKAIMSSQEFNDSGELTSKEMSYH*	374

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lapu3g01640	373	ProSiteProfiles	Protein kinase domain profile.	31	291	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lapu3g01640	373	Pfam	Protein tyrosine and serine/threonine kinase	34	234	IPR001245	GO:0004672\|GO:0006468
Lapu3g01640	373	FunFam	Proline-rich receptor-like protein kinase PERK1	107	314	-	-
Lapu3g01640	373	SMART	serkin_6	31	266	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lapu3g01640	373	Gene3D	Transferase(Phosphotransferase) domain 1	107	317	-	-
Lapu3g01640	373	Gene3D	Phosphorylase Kinase; domain 1	10	106	-	-
Lapu3g01640	373	FunFam	proline-rich receptor-like protein kinase PERK1	9	106	-	-
Lapu3g01640	373	ProSitePatterns	Protein kinases ATP-binding region signature.	37	59	IPR017441	GO:0005524
Lapu3g01640	373	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	151	163	IPR008271	GO:0004672\|GO:0006468
Lapu3g01640	373	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	16	354	IPR047117	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu3g01640	Lapu-Chr3	21260063	21263985	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu3g01640	6	363	Trihelix Transcription Factor Family	AT1G70460	60.556	3.83e-152	444

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Lapu3g01640		PK_Tyr_Ser-Thr	4.5e-47	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu3g01640	-		-	gmx:100805872	676.011

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