Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01640 ATGGGAATGGGTTCCTCATCGCCAGGCCTTTCTCTCACACTCAACGGTGGTACCTTCACTTACGAGGAGCTTGCAGCTGCCACCAAAGGATTTGCCAATGACCAAATTATTGGACAAGGTGGCTTTGGTTATGTTCATAAGGGAGTTTTACCTAATGGAAAGGAGGTGGCTGTTAAGAGTCTAAAAGCAGGTAGTGGACAAGGAGAACGAGAGTTCCAAGCTGAGATCGATATCATTAGTCGAGTTCATCATCGTCATCTTGTGTCACTTGTTGGATATTGCATTTGTGGAGGCCAAAGAATGTTGGTCTATGAATTTGTTCCCAACTCAACTTTGGAACATCACCTTCATGGAAAAGGTATGCCTACCATGGATTGGCCTACTAGAATGCGAATTGCACTTGGATCTGCCAAAGGGCTTGCCTACCTTCATGAAGATTGTAGTCCTCGAATTATCCATCGTGACATTAAAGCTTCTAACGTTCTTCTTGATGATAGCTTTGAAGCAAAGGTGTCTGATTTTGGACTCGCAAAGTTGACCTCTGATACTAATACACATGTATCAACTCGTGTCATGGGAACATTCGGGTATTTGGCCCCAGAATACGCATCAAGTGGAAAACTGACAGAGAAGTCTGATGTTTTCTCATTTGGGGTCATGCTATTGGAACTCATAACCGGGAAACGACCTGTAGATTCATCAAATGTCATGGAAGACAGTTTAGTGGATTGGGCTCGACCACTCCTAAATAAAGGATTGGAGGATGGTAACTTTGGAGAGTTAGTGGATCCATTTTTGGAAGGCAATTACAATACTCAGGAAATGACAAGAATGGCAGCTTGTGCAGCTGCAAGCATTCGTCATTCTGCCAGGAAGCGTTCAAAAATGAGTCAGATTGTGAGAGCACTGGAAGGAGATGTGTCATTGGAAGACTTGAAAGATGGAATGAAACTTGCAGGGAATGGGAATGGGAATAACAGTGCATATACTTCATCTGGAAGCTCAGAATATGATACCATGCAATACAATGCCGATATGGCTAAGTTCAGAAAGGCAATCATGTCGAGCCAAGAATTTAATGACAGTGGTGAGCTTACCAGTAAGGAGATGAGTTATCATTAA 1122 0.4296 MGMGSSSPGLSLTLNGGTFTYEELAAATKGFANDQIIGQGGFGYVHKGVLPNGKEVAVKSLKAGSGQGEREFQAEIDIISRVHHRHLVSLVGYCICGGQRMLVYEFVPNSTLEHHLHGKGMPTMDWPTRMRIALGSAKGLAYLHEDCSPRIIHRDIKASNVLLDDSFEAKVSDFGLAKLTSDTNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDSSNVMEDSLVDWARPLLNKGLEDGNFGELVDPFLEGNYNTQEMTRMAACAAASIRHSARKRSKMSQIVRALEGDVSLEDLKDGMKLAGNGNGNNSAYTSSGSSEYDTMQYNADMAKFRKAIMSSQEFNDSGELTSKEMSYH* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01640 373 ProSiteProfiles Protein kinase domain profile. 31 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01640 373 Pfam Protein tyrosine and serine/threonine kinase 34 234 IPR001245 GO:0004672|GO:0006468
Lapu3g01640 373 FunFam Proline-rich receptor-like protein kinase PERK1 107 314 - -
Lapu3g01640 373 SMART serkin_6 31 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01640 373 Gene3D Transferase(Phosphotransferase) domain 1 107 317 - -
Lapu3g01640 373 Gene3D Phosphorylase Kinase; domain 1 10 106 - -
Lapu3g01640 373 FunFam proline-rich receptor-like protein kinase PERK1 9 106 - -
Lapu3g01640 373 ProSitePatterns Protein kinases ATP-binding region signature. 37 59 IPR017441 GO:0005524
Lapu3g01640 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Lapu3g01640 373 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 16 354 IPR047117 -
Lapu3g01640 373 SUPERFAMILY Protein kinase-like (PK-like) 10 303 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01640 Lapu-Chr3 21260063 21263985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01640 6 363 Trihelix Transcription Factor Family AT1G70460 60.556 3.83e-152 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lapu3g01640 PK_Tyr_Ser-Thr 4.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01640 - - gmx:100805872 676.011