Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01636 ATGACGGTTGATTTGGACAACGTTTCCACAGCGTCAGGGGAAGCAAGCATCTCTTCCTCCGGCAATCAAACAAATCCCGCTCCCAAGAGAAAACGAAACCTCCCTGGCATGCCAGATCCTGAGGCAGAGGTGATTGCTTTGTCGCCGAAGACGCTGTTGGCGACGAACCGGTTCGTGTGCGAGATATGCAACAAAGGGTTTCAGAGGGACCAGAATCTACAGCTTCATCGGAGAGGACACAACTTGCCGTGGAAGCTGAGGCAGAGGTCCACCAAGGAGGTAAGGAAGAGAGTGTACGTGTGTCCCGAACCCACGTGCGTGCACCACGACCCTACTAGAGCCTTGGGGGACTTGACGGGGATCAAGAAGCACTTCTGCAGGAAGCACGGTGAGAAGAAATGGAAATGCGACAACTGCTCCAAGAAATACGCCGTTCAGTCGGATTGGAAAGCACACTCCAAAGTCTGCGGCAGTAGAGAGTATAAGTGCGATTGCGGAATCGTTTTCTCCAGGAGGGATAACTTCATTACGCATAGAGCGTTTTGCGATGCGTTGGCGGAGGAGAGTTCGAGATCTCACACTGTTGTTACCAAGGCTAATCCGGAGAATGATTTAAAGGTTTTGACTGACTCACCGCCGCCGGAGGTGGCGGCGACTACTGCCACCACCCCGGCGCAGTCAAACAGTGTCATATCTTCTGGCGTGCAGACGCAGAACCCAGAGTTGCCAGAAAATAATCCCCCAGAAGTCATTGAGGAGCCACAAGCTGTTACTGCTATAAGTGGGAGCAGTGGCAGCAACAGCAGTAGCAACTGCTCAACAAGCAATGGTGGTGCTACTAGTAATAGTAATAGTAATAGTAGTAGTGTGTTTGCAAGTTTGTTTGCTTCTTCAACATCATCTGGGACTTTACAATCTGAAACACCAGCATTCAGTGACTTAGTTAGAGCCATGAGGCCTCCAGATCACCATGCAGATATCTCAGATCCCTCTTCATCTGAGACCATATCTCTTTGCCTCTCCACCAGTAATGTCTCACCAATTTTCGCAACAGGAGGTCAGGAGCACCGGCAGTATGCCTCGCCTCCACAACCGGCCATGTCAGCCACTGCATTGCTGCAGAAAGCTGCTCAAATGGGTGCTGCAGCTACAAGTTCCTCTCTGCTTCGCGGGTTTGGCATTGTATCATCATCTTCAGCTTCAACTTCATCTGGGCAGCAAAATGGCCTGCAATGGGGTCAGCCTCTGTTAGAATCTAGTGGCTCGGCTTCTGCAGGGCATCGACTTAGTCTTCCACGTGATGGTGATTCTGGATTGAAGGAATTGATGATGGGGACACCCTCAATGTTTGGTCCTAAACACACAACTCTTGATTTTCTAGGATTGGGGATGGCTGCTGGTGGAGGCTTATCTGCACTCATCACATCTATTGGTGGTGGTGGTTTGGATGTTACTGCTGCAGCAGCAACCTTTGGTAATGGAGAGTTTTCTGGCAAAGATATTGGAAAGAGGAGCTCTTGA 1521 0.503 MTVDLDNVSTASGEASISSSGNQTNPAPKRKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTKEVRKRVYVCPEPTCVHHDPTRALGDLTGIKKHFCRKHGEKKWKCDNCSKKYAVQSDWKAHSKVCGSREYKCDCGIVFSRRDNFITHRAFCDALAEESSRSHTVVTKANPENDLKVLTDSPPPEVAATTATTPAQSNSVISSGVQTQNPELPENNPPEVIEEPQAVTAISGSSGSNSSSNCSTSNGGATSNSNSNSSSVFASLFASSTSSGTLQSETPAFSDLVRAMRPPDHHADISDPSSSETISLCLSTSNVSPIFATGGQEHRQYASPPQPAMSATALLQKAAQMGAAATSSSLLRGFGIVSSSSASTSSGQQNGLQWGQPLLESSGSASAGHRLSLPRDGDSGLKELMMGTPSMFGPKHTTLDFLGLGMAAGGGLSALITSIGGGGLDVTAAAATFGNGEFSGKDIGKRSS* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01636 506 MobiDBLite consensus disorder prediction 215 244 - -
Lapu3g01636 506 MobiDBLite consensus disorder prediction 192 288 - -
Lapu3g01636 506 Gene3D Classic Zinc Finger 38 104 - -
Lapu3g01636 506 MobiDBLite consensus disorder prediction 403 426 - -
Lapu3g01636 506 MobiDBLite consensus disorder prediction 1 29 - -
Lapu3g01636 506 SUPERFAMILY beta-beta-alpha zinc fingers 57 154 IPR036236 -
Lapu3g01636 506 MobiDBLite consensus disorder prediction 257 288 - -
Lapu3g01636 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Lapu3g01636 506 MobiDBLite consensus disorder prediction 1 41 - -
Lapu3g01636 506 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 14 467 IPR031140 -
Lapu3g01636 506 SMART c2h2final6 99 129 IPR013087 -
Lapu3g01636 506 SMART c2h2final6 58 80 IPR013087 -
Lapu3g01636 506 SMART c2h2final6 134 154 IPR013087 -
Lapu3g01636 506 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Lapu3g01636 506 Gene3D Classic Zinc Finger 113 192 - -
Lapu3g01636 506 MobiDBLite consensus disorder prediction 403 438 - -
Lapu3g01636 506 FunFam protein indeterminate-domain 5, chloroplastic-like 112 191 - -
Lapu3g01636 506 FunFam protein indeterminate-domain 12-like 37 105 - -
Lapu3g01636 506 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01636 Lapu-Chr3 21187105 21190411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01636 1 505 IDZ Gene Family AT5G66730 54.495 2.74e-176 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu3g01636 zf-C2H2 0.0051 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01636 K25869 - gmx:100783947 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01636 3 21187105 21190411 Lapu3g01636 3 21187105 21190411 ECH
Lapu3g01636 3 21187105 21190411 Lapu2g00652 2 5704789 5709416 ECH
Lapu2g00652 2 5704789 5709416 Lapu3g01636 3 21187105 21190411 PCT