Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01629 ATGCTTGTCGCGGCCTCAATGCCTCCCGCGGCAGCGCTTCCCGTGGTGCGTCTCCTGTGGTATGAACTCAATCCTGTAGCTATAAAGGCTATGCTTCCAATGCAAACATCAAAAGTTACTGCTGCTCGTAAAGCAAAATTTCAGCGGGAGGTTAACTTGATATCTAGAATTAAACATAAGAATGTAGTAAAGTTTATTGGTGCCTGTGTGGAGCCAACAATGATGATAATTACTGAACTTTTGGAAGGTTGTTCGCTTCAAAAATACCTAGAGAGCATTTATCCAAATTCTCTGACTTTAGAGCAATCCTTAAGTTTTGCTTTGGATATTTCTCAAGCTATGGAGTATTTGCATGCAAATGGCATTATTCACCGAGATCTGAAACCTGGTAATTTGCTTCTTCTCAAAGACAAAATGCAAATTTTACTTACAAATTTTGAGACAGCTAGAGAGGAGATATCTGGTGAGATGACTCCTGAGGCTGGTACATATCGATATATGGCTCCTGAGTTATTCAGCAAGGATCCACTTTCAAAAGGAGCAAAGAAATGCTACGACCATAGGGTAGACGTCCATAGCTTTGCTATGGTTCTATGGACCATAATTAATAATCAAACTCCATTTAAAGGAAGGAGTGACTTGTTGGCAGCTTATGCTATTGTAAAAAACATGAGGCCTAGTTTGGAGGGTTTTCCAGAAGTTCTAATTCCATTATTGCAGTCTTGTTGGGCAGAAGACCCAGAGCTACGACCTGAATTCTCAGAGATCACCCAAATCCTTGAAAAACTTCTCCATAAGTACCACTCATCAGGTACATCACCTGAGGAAAAAGAGTGTCTAGTTACAAGTGTGCAGGAACCTATCCCTAATTATGCTGAAGACAACTCAGAACATGTGGGCGAGGCTCAGAGTCTGAATACAAGTGTCTGCATAGAGGGACAATCTCGTATCATAACTCAAACCCCAAGTCCAGTCTTAGCCCAAACCAAGCCTCTTAAGAAGTTCAAGGGTTTATGGATGACCGAGTGTGTTTATACTCAGAAGCTAACATCCTTTGAGACCAGTGTTGTTCCTGAGGAGATTCGTTATATACCTGTTATGGAGAAGGGAAGAAAGGCATTAGAAGAGATTAATATGGAGATGGGTTTCACCTTTGATGACCAGGATTTGGAATATTACACCAAACTTTTCAGAGAATAA 1200 0.4092 MLVAASMPPAAALPVVRLLWYELNPVAIKAMLPMQTSKVTAARKAKFQREVNLISRIKHKNVVKFIGACVEPTMMIITELLEGCSLQKYLESIYPNSLTLEQSLSFALDISQAMEYLHANGIIHRDLKPGNLLLLKDKMQILLTNFETAREEISGEMTPEAGTYRYMAPELFSKDPLSKGAKKCYDHRVDVHSFAMVLWTIINNQTPFKGRSDLLAAYAIVKNMRPSLEGFPEVLIPLLQSCWAEDPELRPEFSEITQILEKLLHKYHSSGTSPEEKECLVTSVQEPIPNYAEDNSEHVGEAQSLNTSVCIEGQSRIITQTPSPVLAQTKPLKKFKGLWMTECVYTQKLTSFETSVVPEEIRYIPVMEKGRKALEEINMEMGFTFDDQDLEYYTKLFRE* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01629 399 SMART serkin_6 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01629 399 PRINTS Tyrosine kinase catalytic domain signature 116 134 IPR001245 GO:0004672|GO:0006468
Lapu3g01629 399 PRINTS Tyrosine kinase catalytic domain signature 78 91 IPR001245 GO:0004672|GO:0006468
Lapu3g01629 399 PRINTS Tyrosine kinase catalytic domain signature 231 253 IPR001245 GO:0004672|GO:0006468
Lapu3g01629 399 Gene3D Phosphoribosylformylglycinamidine synthase, linker domain 357 399 - -
Lapu3g01629 399 Gene3D Transferase(Phosphotransferase) domain 1 14 290 - -
Lapu3g01629 399 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 16 268 - -
Lapu3g01629 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Lapu3g01629 399 ProSiteProfiles Protein kinase domain profile. 1 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01629 399 Pfam Protein tyrosine and serine/threonine kinase 25 260 IPR001245 GO:0004672|GO:0006468
Lapu3g01629 399 SUPERFAMILY Protein kinase-like (PK-like) 25 270 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01629 Lapu-Chr3 21031148 21038799 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01629 15 282 MAP Kinase Kinase Kinase AT5G66710 53.704 1.82e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lapu3g01629 PK_Tyr_Ser-Thr 6.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01629 - K04427 vum:124848543 531.561