Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01627 ATGAATCATCGACCTGCTGAAGACCATATGATGCTCTTCTCTCAGCTATATCCTGCTGCATTCACTGGAGTAACTCCTCCTCAACAAGGCGAAGCCAAGCCAAGACGCAAGAGAAACAAAAGTAGTAGGGGAGTTGTGGGCACCAACAAGAAGAGGAAGCTCACTGCGGAGCAAGTAAGTCTTCTTGAGAAAAATTTCTGCAATGAACATAAACTTGAATCTCAGAGGAAGGACCAACTAGCATTTGAGCTTGGTATGGACCCTCGACAAGTTGCGGTGTGGTTTCAAAATCGACGTTTTCGTTGGAAGAACAAAAAGTTGGAGGAAGAGTACGCCAATCTTAAGAATATTCACGAAACCACCATGCTCCAGAAATGCCACCTTGAGACTCGGGTTTTGAAGCTGGAGGAGCAGCTTTTGGAAGCAAAGAAGGAGATTCAGCAGCTACAAGAGCGTGGTGAAAGAAAACATTTTCTGGAAGCTGTGAACCAACCATTTCTTGCAGAGTTTAAGGTGGAAGAATATGATTATGGTGATGTTTTTTACACTCCCGAGACCCATTACATCAATGGAATGGAATGGATTAATCTCTTCATGTGA 600 0.4367 MNHRPAEDHMMLFSQLYPAAFTGVTPPQQGEAKPRRKRNKSSRGVVGTNKKRKLTAEQVSLLEKNFCNEHKLESQRKDQLAFELGMDPRQVAVWFQNRRFRWKNKKLEEEYANLKNIHETTMLQKCHLETRVLKLEEQLLEAKKEIQQLQERGERKHFLEAVNQPFLAEFKVEEYDYGDVFYTPETHYINGMEWINLFM* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01627 199 CDD homeodomain 50 106 IPR001356 GO:0003677
Lapu3g01627 199 ProSitePatterns 'Homeobox' domain signature. 80 103 IPR017970 GO:0000981|GO:0006355
Lapu3g01627 199 ProSiteProfiles 'Homeobox' domain profile. 45 105 IPR001356 GO:0003677
Lapu3g01627 199 Gene3D - 41 113 - -
Lapu3g01627 199 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 33 153 IPR045224 GO:0003700
Lapu3g01627 199 SMART HOX_1 48 109 IPR001356 GO:0003677
Lapu3g01627 199 MobiDBLite consensus disorder prediction 24 50 - -
Lapu3g01627 199 Coils Coil 132 152 - -
Lapu3g01627 199 Pfam Homeodomain 50 104 IPR001356 GO:0003677
Lapu3g01627 199 Coils Coil 97 124 - -
Lapu3g01627 199 SUPERFAMILY Homeodomain-like 49 112 IPR009057 -
Lapu3g01627 199 FunFam homeobox-leucine zipper protein ATHB-40 44 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01627 Lapu-Chr3 21010665 21012783 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01627 1 199 Homeobox Transcription Factor Family AT2G18550 46.018 1.51e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lapu3g01627 Homeodomain 3.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01627 K09338 - gmx:100803948 265.774