Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01626 GGCGAAGCCAAGCCAAGACGCAAGAGAAACAAAAGTAGTAGGGGAGTTGTGGGCACCAACAAGAAGAGGAAGCTCACTGCGGAGCAAGTAAGTCTTCTTGAGAAAAATTTCTGCAATGAACATAAACTTGAATCTCAGAGGAAGGACCAACTAGCATTTGAGCTTGGTATGGACCCTCGACAAGTTGCGGTGTGGTTTCAAAATCGACGTTTTCGTTGGAAGAACAAAAAGTTGGAGGAAGAGTACGCCAATCTTAAGAATATTCACGAAACCACCATGCTCCAGAAATGCCACCTTGAGACTCGGGTTTTGAAGCTGGAGGAGCAGCTTTTGGAAGCAAAGAAGGAGATTCAGCAGCTACAAGAGCGTGGTGAAAGAAAACATTTTCTGGAAGCTGTGAACCAACCATTTCTTGCAGAGTTTAAGGTGGAAGAATATGATTATGGTGATGTTTTTTACACTCCCGAGACCCATTACATCAATGGAATGGAATGGATTAATCTCTTCATGTGA 513 0.4347 GEAKPRRKRNKSSRGVVGTNKKRKLTAEQVSLLEKNFCNEHKLESQRKDQLAFELGMDPRQVAVWFQNRRFRWKNKKLEEEYANLKNIHETTMLQKCHLETRVLKLEEQLLEAKKEIQQLQERGERKHFLEAVNQPFLAEFKVEEYDYGDVFYTPETHYINGMEWINLFM* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01626 170 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 14 124 IPR045224 GO:0003700
Lapu3g01626 170 Coils Coil 103 123 - -
Lapu3g01626 170 SMART HOX_1 19 80 IPR001356 GO:0003677
Lapu3g01626 170 Coils Coil 68 95 - -
Lapu3g01626 170 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Lapu3g01626 170 MobiDBLite consensus disorder prediction 1 22 - -
Lapu3g01626 170 Gene3D - 12 84 - -
Lapu3g01626 170 CDD homeodomain 21 77 IPR001356 GO:0003677
Lapu3g01626 170 SUPERFAMILY Homeodomain-like 20 83 IPR009057 -
Lapu3g01626 170 FunFam homeobox-leucine zipper protein ATHB-40 15 84 - -
Lapu3g01626 170 Pfam Homeodomain 21 75 IPR001356 GO:0003677
Lapu3g01626 170 ProSitePatterns 'Homeobox' domain signature. 51 74 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01626 Lapu-Chr3 20900830 20902256 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01626 1 170 Homeobox Transcription Factor Family AT4G36740 50.794 6.05e-56 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lapu3g01626 Homeodomain 2.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01626 K09338 - gmx:100803948 236.498