Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01617 ATGGACCAGGCCGAGTTAACTACCGAACAGGTTCTGAGTAGGGACATTCCATGGGAGACCTACATGTCCACGAAGCTCATCTCAAGCACGAGCCTGCAGCTCATAAGGCGCTACGATCACCGGTCAGAGAGTCACAGAGCACAGTTGCTTGATGATGATGGTCCCTCTTATGTTCGTGTGTTTGTTCGTGTTCTTCGTGATATTTTCAAGGAAGATACTGTAGAGTATGTTTTGGCACTGATAGATGAAATGCTTGCTGCGAACCCGAAGAGAGCAAGACTGTTTCATGACAGTACCCTTGCAGATGAAGATACTTATGAGCCTTTCCTAAGATTGCTCTGGAAAGGAAACTGGTTTATACAAGAGAAAAGTTGTAAGATCCTTGCTTTAATTGTTAGTGTCAGGCCAAAAACCCAGAACAGTGTCGTGTCTAATGGAGAAGCATCAAATGGAAAGAAGCCATTTACCACTATTGATGATGTTTTGATAGGATTAGTAAAATGGCTTTGTGAACAGTTGAAGAAACCTTTTCATCCTACTCGTGGAGTTCCAACTGCTATCAATTGCCTAGCGACACTGCTTAAGGAACCTGTGGTTAGGTCTTCCTTTGTTCAGGCAGATGGGGTCAAGTTACTTGTGCCATTAATTTCACCAGCATCCACACAACAGTCCATTCAGCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCAGCAATTGAATATTTGGCTACTTCAAGGACCCTTCCTCGACTTATTGATGTCGTTAAGAGTTCTACAAAAGAGAAGGTGGTTAGAGTTATTGTCTTGACTCTTAAGAACTTGATGTCAAAAGGGACATTGGGTGCTCAGATGGTTGACCTTCAGCTGCCACAAGTTGTCCAGAGTTTAAAAGCACAAGCATGGAGTGATGAGGACTTGTTGGAGGCACTGAATTCTCTGGAAGAAGGGCTTAAGGATAATATTAAGAAACTAAGTTCTTTTGATATGTACAAGCAAGAAGTTCTCCTTGGCCATCTAGATTGGTCTCCCATGCACAAAGATCCCATATTCTGGAGAGAAAATATAACCACCAACTTTGAAGAAAATGATTTCCAGATCCTAAGGGTCCTAATAACAATTTTGGACACTTCCAGTGATCCAAGGACTCTGGCAGTCGCTTGTTATGACCTTTCACAGTTTATCCAGCACCATCCTGCTGGACGGATCATTGTGACAGACCTCAAGGCCAAGGAACGGGTTATGAAACTTATGAACCATGAAAATGCTGAAGTTACTAAGAATGCACTACTCTGCATCCAGCGGCTTTTCTTAGGTGCAAAGTATGCAAGTTTCTTGCAGGTTTAA 1362 0.4251 MDQAELTTEQVLSRDIPWETYMSTKLISSTSLQLIRRYDHRSESHRAQLLDDDGPSYVRVFVRVLRDIFKEDTVEYVLALIDEMLAANPKRARLFHDSTLADEDTYEPFLRLLWKGNWFIQEKSCKILALIVSVRPKTQNSVVSNGEASNGKKPFTTIDDVLIGLVKWLCEQLKKPFHPTRGVPTAINCLATLLKEPVVRSSFVQADGVKLLVPLISPASTQQSIQLLYETCLCIWLLSYYEPAIEYLATSRTLPRLIDVVKSSTKEKVVRVIVLTLKNLMSKGTLGAQMVDLQLPQVVQSLKAQAWSDEDLLEALNSLEEGLKDNIKKLSSFDMYKQEVLLGHLDWSPMHKDPIFWRENITTNFEENDFQILRVLITILDTSSDPRTLAVACYDLSQFIQHHPAGRIIVTDLKAKERVMKLMNHENAEVTKNALLCIQRLFLGAKYASFLQV* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01617 453 FunFam V-type proton ATPase subunit H 343 445 - -
Lapu3g01617 453 PIRSF V-ATP_synth_H 1 452 IPR004908 GO:0000221|GO:0046961|GO:1902600
Lapu3g01617 453 Pfam V-ATPase subunit H 4 323 IPR004908 GO:0000221|GO:0046961|GO:1902600
Lapu3g01617 453 CDD VATPase_H 2 447 - -
Lapu3g01617 453 SMART arm_5 241 282 IPR000225 GO:0005515
Lapu3g01617 453 SMART arm_5 403 443 IPR000225 GO:0005515
Lapu3g01617 453 SMART arm_5 195 240 IPR000225 GO:0005515
Lapu3g01617 453 Gene3D - 4 331 IPR011989 -
Lapu3g01617 453 SUPERFAMILY ARM repeat 8 443 IPR016024 -
Lapu3g01617 453 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 399 406 IPR018506 GO:0020037
Lapu3g01617 453 Gene3D - 343 445 IPR038497 -
Lapu3g01617 453 Pfam V-ATPase subunit H 329 442 IPR011987 GO:0000221|GO:1902600
Lapu3g01617 453 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 1 452 IPR004908 GO:0000221|GO:0046961|GO:1902600
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01617 1 452 Primary Pumps ATPases(2) AT3G42050 79.204 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01617 K02144 - gmx:100788723 851.277