Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01616 ATGAAGAGAGGTCTTTTATCACAATATGAAGAGAAAATGGTCATTGATCCCCATGCTCAACTTGGCAATAGGTGGTCTAAGATTGCTTCTCATCTCCCAGGAAGAACTGATAACGAGATCAAGAATCAGTGGAACACTTCCATAAAGAAAAAGCTCAAGAAAATGGGAATTGATCCTATTATCCACAAGACACATCGAATTAATCATATTGTTTCAATTTACTCCTCCTCTGAACCACCATCAATGCCTTAG 252 0.381 MKRGLLSQYEEKMVIDPHAQLGNRWSKIASHLPGRTDNEIKNQWNTSIKKKLKKMGIDPIIHKTHRINHIVSIYSSSEPPSMP* 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01616 83 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 66 - -
Lapu3g01616 83 SMART sant 2 50 IPR001005 -
Lapu3g01616 83 Gene3D - 7 69 - -
Lapu3g01616 83 FunFam MYB transcription factor 4 65 - -
Lapu3g01616 83 SUPERFAMILY Homeodomain-like 5 57 IPR009057 -
Lapu3g01616 83 ProSiteProfiles Myb-like domain profile. 1 48 IPR001005 -
Lapu3g01616 83 CDD SANT 10 46 IPR001005 -
Lapu3g01616 83 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 52 IPR017930 -
Lapu3g01616 83 Pfam Myb-like DNA-binding domain 8 46 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01616 Lapu-Chr3 20447094 20447959 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01616 1 63 MYB Transcription Factor Family AT1G66230 85.714 3.06e-34 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu3g01616 Myb_DNA-binding 3.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01616 K09422 - sly:544120 124.79