Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01615 ATGGGTTGGTTCACTAAATTGCTCAAGGGATCCAACCGTAAATATTCAGGAGGAAGATACCATGGGAAATATGGAGAAGACAGATATTCAGACAATCATGATAATTCAGCGGATGATTTGACGGAACTTGAGAAAGAAGAAATTGATCGGGCAATAGCACTATCTCTTTCAGAGGCAGATCATAAAGGGAAAAAAGCTATTGAGGATGACTCTGAATCTGAAGATGATGAACTGTGTCCACTTGATGATGAGGAAGACAAACGTGTTGGTGAAGTTCAGCTAGATGAAGATGACCATCATGCTCAAATTCAACAGGATGAAGACAAAAATCTTGATGAATTTCAACTTGAGGAAGATGAACAACTTGCCAGGGCAATTCAAGAAAGTTTGAGCATTAGTTCTCCTCCTCGATCTGACACTGATTCATTATTTCAACCTTTTGCACAGTTATTCCCACCTGTATACAGAATCTGTGTTGGCTGCAATACCGAGATTGGCAGTGGAAGATTTTTGAGTTGCATGGGATGTTTTTGGCATCCTGAATGTTTTTGTTGTCATGCTTGCAAACTTCCAATCACTGATTATGAGTTTTCCATGTCTGGAAATCGCCGTTATCATAAATCCTGCTATAAGGAGTTGCATCATCCCAGATGTGATGTTTGCAATAACTTTATCCCACCAAACTCAGCTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGTTACAAAAATATTGTCCATCGCATGAGCGTGACGGTACTCCTCGTTGTTGTAGCTGTCAAAGAATGGAGTCAGTGGATGCCAAATATCTGTTGCTTGATGATGGCCGAAAGCTGTGTCTGGAGTGTCTTGACTCAGCTATCATGGATACACATGAATGCCAACCTCTCTATGTTGAAATACAAGAATTTTATGAAGGTTTGCACATGAAGATAGAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAGGCACTGAACGAAGCAATGGAGGGAGAGAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTTTGCTTGTCTGAAGAGCAAACTATTCCCACTATTTTAAGGAGACCAAGGATAGGAGCAGGATACCAGCTCATAGATATGATAACCGAGCCTTTTAGACTGATCCGTCGATGCGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCCAGGCTATTGACTGGCTCAATCCTGGCTCACGAAATGATGCATGCGTGGCTTAGACTTAAAGGCTATGGCAATCTCAGGCCAGAAGTTGAAGAGGGAATTTGCCAAGTTTTGGCTCATATGTGGTTAGATTCAGAGATCTATTCCAGCTCTGGGAATGAAGGTGCATCGTCATCTTCTTCTTCTTCTTCCTCATCCTCTTCATCACCTTCGTCCTCTTCGTCATCTAAGAAGGGTAAACGTTCTGACTTTGAGAAGAAACTTGGTGAATATTTCAAACACCAGATTGAGTCAGATAGCTCACAAGCTTATGGAGATGGATTCAGAGAGGGTAACCAGGCAGTGCTCAAGTATGGGCTTAAAAGGACCCTTGACCATATCCGAATGACTGGAAGTTTTCCATATTGA 1590 0.4208 MGWFTKLLKGSNRKYSGGRYHGKYGEDRYSDNHDNSADDLTELEKEEIDRAIALSLSEADHKGKKAIEDDSESEDDELCPLDDEEDKRVGEVQLDEDDHHAQIQQDEDKNLDEFQLEEDEQLARAIQESLSISSPPRSDTDSLFQPFAQLFPPVYRICVGCNTEIGSGRFLSCMGCFWHPECFCCHACKLPITDYEFSMSGNRRYHKSCYKELHHPRCDVCNNFIPPNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCQRMESVDAKYLLLDDGRKLCLECLDSAIMDTHECQPLYVEIQEFYEGLHMKIEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTIPTILRRPRIGAGYQLIDMITEPFRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLDSEIYSSSGNEGASSSSSSSSSSSSSPSSSSSSKKGKRSDFEKKLGEYFKHQIESDSSQAYGDGFREGNQAVLKYGLKRTLDHIRMTGSFPY* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01615 529 MobiDBLite consensus disorder prediction 19 39 - -
Lapu3g01615 529 Gene3D Cysteine Rich Protein 154 215 - -
Lapu3g01615 529 SMART uim 43 62 IPR003903 -
Lapu3g01615 529 SMART uim 117 136 IPR003903 -
Lapu3g01615 529 CDD LIM_DA1 158 210 - -
Lapu3g01615 529 MobiDBLite consensus disorder prediction 10 39 - -
Lapu3g01615 529 MobiDBLite consensus disorder prediction 59 83 - -
Lapu3g01615 529 SMART lim_4 157 209 IPR001781 -
Lapu3g01615 529 ProSiteProfiles LIM domain profile. 156 216 IPR001781 -
Lapu3g01615 529 FunFam Protein DA1-related 1 152 211 - -
Lapu3g01615 529 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 117 136 IPR003903 -
Lapu3g01615 529 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 154 183 - -
Lapu3g01615 529 ProSitePatterns LIM zinc-binding domain signature. 158 192 IPR001781 -
Lapu3g01615 529 PANTHER PROTEIN DA1-RELATED 2 3 529 IPR045218 -
Lapu3g01615 529 MobiDBLite consensus disorder prediction 447 476 - -
Lapu3g01615 529 MobiDBLite consensus disorder prediction 447 471 - -
Lapu3g01615 529 Pfam Protein DA1 307 524 IPR022087 -
Lapu3g01615 529 Pfam LIM domain 158 212 IPR001781 -
Lapu3g01615 529 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 185 242 - -
Lapu3g01615 529 Coils Coil 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01615 Lapu-Chr3 20440058 20446470 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu3g01615 DA1-like 2e-105 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01615 - - gmx:100806605 947.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01615 3 20440058 20446470 Lapu3g01615 3 20440058 20446470 ECH
Lapu3g01615 3 20440058 20446470 Lapu2g00622 2 5430367 5437482 ECH
Lapu2g00622 2 5430367 5437482 Lapu3g01615 3 20440058 20446470 PCT