Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01614 ATGGGAATAGCAACACCATCTTCTTCGCTTCCTTCTATTCTCTCTCACTCCAAGACACTCCAACAGCACCATTCGAATTCTATGTCCCAAGATTACCACCACCACCAAGGAATCTTCAGCTTCCCGAATGGGTTCGAGAGATCGGCTACAACGATGAGTCACCAAGACCCTCACCAACAACAGCAACAGCACCAGCAGATTCGTAGGGACAAAGTGAGGGTGCAAGGCTTTGAGCCACAACAAACTTTGGTCCCCATAGAGGAAGACGAACCAGGAAGCCTCCCGGTGTACGAAACCGCGGGGATGTTGTCGGAGATGTTCACTTTCCCTCCCGGCGCCGCCACGGAATTGTTGGAGCAACAGCAACAACAGCCCCAGCAGCAACAACCAATGACGACGACGTTTCGGTCGTCGGCGAGAGCAGTGGGCAGTGGTGGCAGCGAGTGGTACGGAAACAGACAAGGGATGTTAACCGGGTTGGGACCGTTGGGAGATTCCAAGAATCATCATCATCATGGCAGTGTGAATAGCCGTGACAGTAGCAGCAGCAGCATAGTTCAGCATCAGCACCATCATCATCACCACAACCACCATCATCACCATCAGATGTCGAGCATTAATGCAGACTCTGCAGCTGCCATGCAGCTTTTTCTCATGAACCCGCAAACCACCAGATCCCCTTCTCCCCCTCCTCCTCCTTCTTCCACTCTCCACATGTTACTTCCCACTTTTCCTCCAGGCTCAGGAGGGTCTTTTGGTCAATTCACGTGGCTCCCTGACACTGCTCAAGATGGAGGAGGACCCAGTACTGTAGTGGAAGGCCCCGGTCACGGCCAAGGTCTTTCCTTATCCTTGTCCTCCTCCTTAGAAGCTGCGAAAGCGGAGGAACTTAGGATGGGGGATAGTGGGTTTTTGTATTACAATCAAGCTAGTGGAGGACCCTCTTCCTATAAGAGTGCTCTTGGGGGTCATCACCACCAAGCATTGTTGGGACAGACCCACCAGGGGCATGTTGGCTTTGCAGCATCATCTTCCACATCATCCCTGGGTGTTGTCAATGCCTTGAGGAATTCAAAGTATGTTAAGGCTGCTCAGGAATTGCTTGAAGAGTTTTGCAGTGTTGGGAGGGGCCAGTTCAAGAAGAACAAGTTCAATAGGCAACTCTCAAACCCTAGCTCCAATCTTGGAGGTAGTGGTGGCGGCGGCGGCGGCGCTTCCTCGTCTTTGTCAAAGGATGTTCCTCCTTTGTCAGCAGCTGATAGAATTGAGCATCAAAGGAGGAAGGTCAAACTTCTAACAATGCTTGACGAGGCATATCGGAGATACAGCCACTACTGCGAGCAAATGCACATGGTGGTGAACTCGTTTGACATGGTGATGGGTTTTGGTGCTGCGGTGCCATACACCGCACTTGCGCAGAAAGCAATGTCTCGTCACTTTAGGTGTCTAAAGGATGCGATAACTGCACAACTGAAGCATAGTTGTGAGCTGTTGGGAGAGAAAGATGGGGCAGGGAACTCAGGGTTGACCAAAGGAGAGACCCCAAGGCTCAAGTTGCTTGAACAAAGTTTGAGACAGCAAAGAGCGTTTCATCAAATGGGGATGATGGAACAGGAAGCTTGGAGACCCCAGAGAGGGTTGCCAGAACGATCTGTCAACATTTTGAGAGCCTGGCTTTTCGAGCATTTCCTTCATCCGTACCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGGCTATCGAGAAATCAGGTATCAAACTGGTTCATTAATGCGAGAGTTCGATTGTGGAAACCCATGGTGGAAGACATGTACCAACAAGAACTCAAGGAAGCTGAAGGAGCAGAAGATGAGAGAGAGATGAACCAAAGCAGCAGCAACAACAGTGGCCACCAACTGGCACAAACCCCAACGCCCTCCACCACAGCATCGACAGCAACAGCGCCACCACCGCCACCAACAACATCGACAGCGACGACACCACCAACCGCCAAGAGATCCGACACCGAAAGCGACCCTTCACTCGCCCCAATAAATAACAACAGACCACAGGGAGCCTTCTCGGAAACACAGCCCAACTCGTCCACCACCGCCACTGCCTCTGAGGTGGCGCAGACCTCGGAGCTGCCCCGGTCGATGGGGGCTGACGACTCGTGCCGGCACGGTAGCCTGGTTGCGACGGAGTTTGGGACCGGTCCTGGCGCTTCTGACATTGGTTCGACACTGATTAGGTTTGGAACCACCGCAGGTGACGTGTCACTGACACTAGGGCTACGTCACGCCGGGAACATGCCGGAGAAAACTCCATTCTCCGTTAGGGACTTTGGAGGCATTTAA 2343 0.5245 MGIATPSSSLPSILSHSKTLQQHHSNSMSQDYHHHQGIFSFPNGFERSATTMSHQDPHQQQQQHQQIRRDKVRVQGFEPQQTLVPIEEDEPGSLPVYETAGMLSEMFTFPPGAATELLEQQQQQPQQQQPMTTTFRSSARAVGSGGSEWYGNRQGMLTGLGPLGDSKNHHHHGSVNSRDSSSSSIVQHQHHHHHHNHHHHHQMSSINADSAAAMQLFLMNPQTTRSPSPPPPPSSTLHMLLPTFPPGSGGSFGQFTWLPDTAQDGGGPSTVVEGPGHGQGLSLSLSSSLEAAKAEELRMGDSGFLYYNQASGGPSSYKSALGGHHHQALLGQTHQGHVGFAASSSTSSLGVVNALRNSKYVKAAQELLEEFCSVGRGQFKKNKFNRQLSNPSSNLGGSGGGGGGASSSLSKDVPPLSAADRIEHQRRKVKLLTMLDEAYRRYSHYCEQMHMVVNSFDMVMGFGAAVPYTALAQKAMSRHFRCLKDAITAQLKHSCELLGEKDGAGNSGLTKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAEGAEDEREMNQSSSNNSGHQLAQTPTPSTTASTATAPPPPPTTSTATTPPTAKRSDTESDPSLAPINNNRPQGAFSETQPNSSTTATASEVAQTSELPRSMGADDSCRHGSLVATEFGTGPGASDIGSTLIRFGTTAGDVSLTLGLRHAGNMPEKTPFSVRDFGGI* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01614 780 Pfam Homeobox KN domain 558 597 IPR008422 GO:0003677|GO:0006355
Lapu3g01614 780 Pfam Associated with HOX 355 488 IPR006563 -
Lapu3g01614 780 MobiDBLite consensus disorder prediction 385 420 - -
Lapu3g01614 780 ProSiteProfiles 'Homeobox' domain profile. 538 601 IPR001356 GO:0003677
Lapu3g01614 780 SUPERFAMILY Homeodomain-like 543 608 IPR009057 -
Lapu3g01614 780 MobiDBLite consensus disorder prediction 613 721 - -
Lapu3g01614 780 Gene3D - 544 606 - -
Lapu3g01614 780 MobiDBLite consensus disorder prediction 118 206 - -
Lapu3g01614 780 CDD homeodomain 541 602 IPR001356 GO:0003677
Lapu3g01614 780 MobiDBLite consensus disorder prediction 1 68 - -
Lapu3g01614 780 MobiDBLite consensus disorder prediction 1 36 - -
Lapu3g01614 780 SMART HOX_1 541 605 IPR001356 GO:0003677
Lapu3g01614 780 MobiDBLite consensus disorder prediction 43 62 - -
Lapu3g01614 780 FunFam BEL1-like homeodomain protein 4 544 606 - -
Lapu3g01614 780 MobiDBLite consensus disorder prediction 646 660 - -
Lapu3g01614 780 MobiDBLite consensus disorder prediction 623 645 - -
Lapu3g01614 780 SMART prehox3 349 489 IPR006563 -
Lapu3g01614 780 MobiDBLite consensus disorder prediction 385 413 - -
Lapu3g01614 780 MobiDBLite consensus disorder prediction 661 714 - -
Lapu3g01614 780 MobiDBLite consensus disorder prediction 187 201 - -
Lapu3g01614 780 MobiDBLite consensus disorder prediction 118 141 - -
Lapu3g01614 780 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 193 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01614 Lapu-Chr3 20345583 20353601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01614 349 780 Homeobox Transcription Factor Family AT2G23760 54.098 3.10e-144 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lapu3g01614 POX 5.6e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01614 - - gmx:100814959 1153.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01614 3 20345583 20353601 Lapu3g01614 3 20345583 20353601 ECH
Lapu3g01614 3 20345583 20353601 Lapu2g00621 2 5403527 5411663 ECH
Lapu2g00621 2 5403527 5411663 Lapu3g01614 3 20345583 20353601 PCT