Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01612 ATGAACAGCAAATCTCTGACGTTTCTTACTACAGCCATTTCGACAAGGTTCCGCGTTCCTCTTCCTCAAACTCAATGTCAATTCTACTGTTCTCCACCCTCTCATCCTTCCTCCAACAAGCTCTTTGTTGGAGGGTTGTCATGGTCAGTGGACGAGAAGTCGCTCAAAGACGCTTTCTCTTCCTTCGGAGACGTCACCGAAGTGAGGATAGTGTATGATAAAGACAGTGGCAGGTCTAGAGGCTTTGGATTTGTCATTTTTTCAAATGAAGATGATGCCAAATGTGCAAAGGAAGCAATGGATGGAAAGGCACTGTTAGGTAGACCATTGAGGATAAGTATTGCGCTTGAGAAGGCCCGAGGTGGACCTGTTGTAGTTCCTCGACTTTCAGATATCGGACATTTGAACAGGCGCTGA 417 0.4604 MNSKSLTFLTTAISTRFRVPLPQTQCQFYCSPPSHPSSNKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRSRGFGFVIFSNEDDAKCAKEAMDGKALLGRPLRISIALEKARGGPVVVPRLSDIGHLNRR* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01612 138 Gene3D - 22 121 IPR012677 -
Lapu3g01612 138 SUPERFAMILY RNA-binding domain, RBD 20 122 IPR035979 GO:0003676
Lapu3g01612 138 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 10 119 - -
Lapu3g01612 138 CDD RRM2_NsCP33_like 40 115 - -
Lapu3g01612 138 SMART rrm1_1 40 113 IPR000504 GO:0003723
Lapu3g01612 138 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Lapu3g01612 138 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 111 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01612 Lapu-Chr3 20263287 20274608 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01612 41 118 Eukaryotic Initiation Factors Gene Family AT1G71770 38.462 5.37e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01612 - - gmx:100810104 231.876