Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01575 ATGGAACTGAGCTTGGATTTGACCTTGGCCTTTGTCCCCGGAAGAACCGTTCGTCAGATTCTTGGCGAGGTTGCTCAGAGCGAAGAAGGGTCTCAGAGAATGGCCACGCTTGAGGACTTTCTCCAAAGGTTGGAAGATGAGAAGAGGAAGATCGAGTCCTTCAAACGTGAACTACCTCTTTGCATGGTCCTTGTGAACGATGCTATAACTAAATTGAAAAAGGAGATAAACGGAGGTGTGAGAATGCAAGATGAACCCGTGGTTGAAGAATATATGCCACTCATAAAAACCAGTTCTGAAGGAAGTGAGACTTTAAACATGGGAAAGGAACGCAGTGAGATGAAGAATTGGATGAACTCTGTTCGGCTATGGAACGCTGAATCCAAACTGAAGAGGAATGAAGAGGACGATCGATGTGTCCCTAACAATCCAATTCAACCCCAGAATGAGACCAACAAGAATAGAGGAGCATCACTAGCATTCAATGGAAACAATTGTGTCTTAAAGACAGAGATGAGTGAAGACAAGGGGGTGTCACAACAAGTTCCTAGCCTTGGTCTGATGAGACCAGTGTTTGAATTGAATCATAGAAAAACAGAAAGTGGTAGTGAACATGGGTCGTCCTTGATTACAAGCTCAGTGGAGGTAAAGGGTCAAGCACAGCCACAGCAGAATCCGAGGAAACAAAGGCGATGCTGGTCACCAGAGCTTCATAGGCGATTTGTTGATGCCCTTCAACAATTAGGGGGACCACAAGTGGCCACTCCAAAGCAGATTAGAGAACTGATGCAGGTGGTAGGCCTGACAAATGATGAAGTGAAAAGCCATTTACAGAAGTACAGACTTCATTTTAGAAGACCTCAAGTTTGTTCAGTTGGCGAGGCTAATAGTGGCTTATGCCTGATGGTAGAAGATAAATGTGGAGATAATAATAAATCAAAAGGGAATTTATCACAATCTGGCTCTCCACAAGGTCCTCTTTTCTTAGGAGGGTCTGGACGGAACAGCATGGACACAGAAGAAGATGAACAATCAGATTGCCACAATTGGAAAGGTGGCCTTCACCACCAACCAGAAGCTGAACTTCTATGA 1092 0.4451 MELSLDLTLAFVPGRTVRQILGEVAQSEEGSQRMATLEDFLQRLEDEKRKIESFKRELPLCMVLVNDAITKLKKEINGGVRMQDEPVVEEYMPLIKTSSEGSETLNMGKERSEMKNWMNSVRLWNAESKLKRNEEDDRCVPNNPIQPQNETNKNRGASLAFNGNNCVLKTEMSEDKGVSQQVPSLGLMRPVFELNHRKTESGSEHGSSLITSSVEVKGQAQPQQNPRKQRRCWSPELHRRFVDALQQLGGPQVATPKQIRELMQVVGLTNDEVKSHLQKYRLHFRRPQVCSVGEANSGLCLMVEDKCGDNNKSKGNLSQSGSPQGPLFLGGSGRNSMDTEEDEQSDCHNWKGGLHHQPEAELL* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01575 363 MobiDBLite consensus disorder prediction 336 363 - -
Lapu3g01575 363 NCBIfam myb-like DNA-binding domain, SHAQKYF class 228 283 IPR006447 GO:0003677
Lapu3g01575 363 MobiDBLite consensus disorder prediction 142 158 - -
Lapu3g01575 363 Pfam Myb-like DNA-binding domain 230 281 IPR001005 -
Lapu3g01575 363 SUPERFAMILY Homeodomain-like 226 286 IPR009057 -
Lapu3g01575 363 MobiDBLite consensus disorder prediction 312 326 - -
Lapu3g01575 363 FunFam Myb family transcription factor 227 285 - -
Lapu3g01575 363 MobiDBLite consensus disorder prediction 134 158 - -
Lapu3g01575 363 Coils Coil 27 57 - -
Lapu3g01575 363 MobiDBLite consensus disorder prediction 311 363 - -
Lapu3g01575 363 MobiDBLite consensus disorder prediction 204 230 - -
Lapu3g01575 363 MobiDBLite consensus disorder prediction 198 231 - -
Lapu3g01575 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 225 285 IPR017930 -
Lapu3g01575 363 Gene3D - 227 285 - -
Lapu3g01575 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 16 350 IPR044787 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01575 Lapu-Chr3 19236476 19239135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01575 1 284 G2-like Transcription Factor Family AT4G37180 37.241 9.82e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lapu3g01575 Myb_DNA-binding 8.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01575 - - gmx:100794220 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01575 3 19236476 19239135 Lapu3g01575 3 19236476 19239135 ECH
Lapu3g01575 3 19236476 19239135 Lapu2g00590 2 5147184 5149871 PCT