Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01574 ATGACCCCATGCGGCGCTTGCAAGTACCAGCGGCGGAGGTGCGGGAGGGATTGCCTGTTGGGGCCGTATTTTCCGGCGGAGAGCATTCAGCGGTTCGCGTACGTGCACCACGTATTCGGTGGGGGCAACGTGAGTAACATTTTGAAGTCGACGGAGCCGGAGTTGCGGAAGTGGGTGGTGAGGGCGCTGGCGTACCAAGCGGAGGCGCGTGTGAGAGATCCGGTGCACGGTTGCGTGGGGGTGATATGGGATCAGGAGGAGAATGTTCGAATCCTGAAAGAGAAGCTGGAGAAGGCGAAAAGGGAACTGGCCCAATACGTGAGCCCAGAGGTTATGCAAAAGATCAGTAGCGAGTGTTCCTCGGTTTCGCGTGCGAATATGGTGGACCTTGAGGCTCCTCTCTCTTCCCCCGTTCCCGAAGATGATATTCGTTTACGGGATCCTTTTCCGGTTTGGGAACCACCGTCTAAGCGGGTGAAGCCACCACGAGTTGCTAATGCTTCAAGAGAAATTCTCTAA 519 0.5626 MTPCGACKYQRRRCGRDCLLGPYFPAESIQRFAYVHHVFGGGNVSNILKSTEPELRKWVVRALAYQAEARVRDPVHGCVGVIWDQEENVRILKEKLEKAKRELAQYVSPEVMQKISSECSSVSRANMVDLEAPLSSPVPEDDIRLRDPFPVWEPPSKRVKPPRVANASREIL* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01574 172 Coils Coil 82 102 - -
Lapu3g01574 172 ProSiteProfiles LOB domain profile. 2 103 IPR004883 -
Lapu3g01574 172 MobiDBLite consensus disorder prediction 147 172 - -
Lapu3g01574 172 Pfam Lateral organ boundaries (LOB) domain 3 100 IPR004883 -
Lapu3g01574 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01574 Lapu-Chr3 19217295 19217976 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01574 2 115 AS2 family AT5G66870 46.491 4.59e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lapu3g01574 LOB 1.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01574 - - gmx:102663028 172.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01574 3 19217295 19217976 Lapu3g01574 3 19217295 19217976 ECH
Lapu3g01574 3 19217295 19217976 Lapu2g00588 2 5126076 5127184 PCT