Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01573 ATGTCGTCGTTGAATTCGCCGTGCGCCGCGTGTAAGCTTCTGCGCCGGAAGTGCACGCAGGAGTGCGTGTTCGCTCCGTACTTTCCGCCGGACAACCCGCAACGGTTCGAGTGCGTGCACCGCGTGTTCGGCGCGAGCAACGTGTCGAAGCTGCTGAACGAGCTCAGCGTGGCGCAACGCGACGACGCCGTTAAGTCGCTGGCGTATGAGGCGGAGGCGCGTTTGCGTGACCCCGTGTATGGCTGTGTGGGATTAATTTCGTTACTACAGCAACGGCTCCGTCAAATCCAAATGGAGCTTCACAGCGCGAAGAAGGAATTCTCCACTTATGTTAGTCCTCAGACTATGCAGATTCTCTTGGCCAATCCTGGGATGGTGCCACCTGCTGAGATTGTCGTGCCTCATCTGCATCAACCTCTGTTCAATCATGGTGGCAACAACATGGCGCCGCCGCAGACTCTGGTTGGCCATGGCGGTGGCCAGACTGTGGTTCGCGACCCTCAGCAACAGGATTTTCAAGAAGCTCAGCAGATGGTTCTTGCAACTAGGGAGCAACAACAGATGTTTAGAAACTATGAGCAACAAGTCTTTGGTGGTTTTGAAACTAGTAATGGTGGATTTGGGAACCAAGCAGAATTGTTGTCTCCTTCTTTGGCTCTTGGAAATTTTGGTAATGTTGGAGCTTACCAGATGCAGCAGCAAGGAGAACAGCATCCGATGGAGGCGCAGTTGCTCCTCTCGCCGCAGCAGGGACAGCCCCATCACCAACAACAGTGTGAAAGTGAGGATGGAAGAAGGGATGTGCTTGATTTCTCAATCAAGTAG 825 0.5358 MSSLNSPCAACKLLRRKCTQECVFAPYFPPDNPQRFECVHRVFGASNVSKLLNELSVAQRDDAVKSLAYEAEARLRDPVYGCVGLISLLQQRLRQIQMELHSAKKEFSTYVSPQTMQILLANPGMVPPAEIVVPHLHQPLFNHGGNNMAPPQTLVGHGGGQTVVRDPQQQDFQEAQQMVLATREQQQMFRNYEQQVFGGFETSNGGFGNQAELLSPSLALGNFGNVGAYQMQQQGEQHPMEAQLLLSPQQGQPHHQQQCESEDGRRDVLDFSIK* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01573 274 Coils Coil 86 106 - -
Lapu3g01573 274 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Lapu3g01573 274 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Lapu3g01573 274 MobiDBLite consensus disorder prediction 258 274 - -
Lapu3g01573 274 MobiDBLite consensus disorder prediction 247 274 - -
Lapu3g01573 274 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01573 Lapu-Chr3 19194066 19195569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01573 1 120 AS2 family AT5G66870 73.333 5.69e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lapu3g01573 LOB 6.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01573 - - vum:124826574 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01573 3 19194066 19195569 Lapu3g01573 3 19194066 19195569 ECH
Lapu2g00588 2 5126076 5127184 Lapu3g01573 3 19194066 19195569 PCT