Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01566 ATGGGTATTTGCAGTTCAAAGTCTCGTGCAAATCCCACACTCTCTTCTTCTCCCAATTCCAACACCCACTTCCCAGACACCAATGCCACTGAACAATTACCTAAAAATCCTATTCCCACTCCAAAAAAATCTCCTCTTTTCCCGTTCTACACTCCGAGCCCGGCCCACCACTTTTTCTCCTGCAAGTCTCCGGCGCCAACGACTCCCCGGCGGTTCTTCAAGCCTCCGTCCCCAGCCAAGCACATTCGGGCAGTGCTGGCCCGGCGTCATGGGTCTGTTAAGCCCAACGAAGCTACCATCCCAGAAGATGAAGTGGTTGCTCTTGACAAGAACTTCGGATTCTCGAAACAGTTTGGGCAAAAGTTTGAGATTGGGGACGAGATTGGACGAGGACACTTTGGTTACACTTGTTCTGCGAAGTTTCTTAAGGGCCAACTCAAAGGCCAACACGTCGCCGTCAAGGTCATCCCTAAAGACAAGATGACAACTGCAATTGCAATTGAGGATGTGAGGAGGGAGGTAAAGATATTGAGGGCTTTGACTGGACATAAGAATCTGATTCAGTTCCACGATGCGTATGAAGATAATGACAATGTCTACATAGTAATGGAGTTCTGCGAAGGAGGGGAGCTTTTGGACAGAATATTGTCGAGAGGAGGAAAATACACGGAGGAAGATGCAAAAGCTGTCATGATACAAATACTAAATGTTGTTGCGTTTTGCCATCTACAGGGTGTTGTCCATCGTGATCTCAAACCAGAGAATTTCTTATTCTCATCCAAAGAAGAGAACTCTGAGCTGAAGGCCATTGACTTTGGATTGTCAGATTTTGTCAAACCAGATGAAAGGCTTAATGATATTGTTGGTAGTGCATACTATGTGGCTCCTGAAGTTTTGCATAGAGCTTACAGTACAGAGGCTGATGTCTGGAGTGTTGGTGTGATTGCGTATATTTTACTATGTGGCAGTCGTCCATTTTGGGCACGGACTGAATCTGGGATATTCCGTGCCGTATTGAAAGCTACTCCAAGTTTTGATGAACCTCCATGGCCTTCTCTATCAGATGAGGCAAAGGATTTTGTTAAGAGACTTCTAAATAAAGATCCAAGGAAAAGAATGACTGCAGCGCAGGCATTGAGTCATCCATGGATTAAAAATTATAAGGACGTAAAAGTACCTTTGGATATTCTAGTGTTCAAGCTCATGAAGACATACATGCGTTCCTCCTCTCTACGAAAAGCAGCTTTAAGGGCTTTGTCTAAGACATTAGCTACCGAAGAACTGCAGTATTTGAAGGAGCAGTTTGCACTTTTAGAGCCAAACAAAACTAACACTATTAGCTTGGAAAATATCAAAGCGGCTTTAATGAAGAATGCAACAGATGCTATGAAGGAATCACGCATTCTAGATTTTCTGGCATCACTTAATGCATTGCAATATAGAAGGATGGCTTTTGATGAGTTCTGCGCGGCTGCACTTAGTGTTCATCAACTTGAAGCACTTGACCGGTGGGAGCAACATGCACGCTGTGCCTATGAACTTTTTGAAAAGGATGGAAATAGAGCTATAGTCATTGAGGAACTAGCTTCGGAGCTTGGGCTTGGTCCATCTGTCCCTGTTCATGCTGTTCTTCACGACTGGATTAGGCACACTGATGGAAAGTTGAGCTTCCTTGGATTTGCTAAGTTATTGCATGGTCCATCTCGAAGTCTTGCAAAACCTCACTAG 1728 0.4439 MGICSSKSRANPTLSSSPNSNTHFPDTNATEQLPKNPIPTPKKSPLFPFYTPSPAHHFFSCKSPAPTTPRRFFKPPSPAKHIRAVLARRHGSVKPNEATIPEDEVVALDKNFGFSKQFGQKFEIGDEIGRGHFGYTCSAKFLKGQLKGQHVAVKVIPKDKMTTAIAIEDVRREVKILRALTGHKNLIQFHDAYEDNDNVYIVMEFCEGGELLDRILSRGGKYTEEDAKAVMIQILNVVAFCHLQGVVHRDLKPENFLFSSKEENSELKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRAYSTEADVWSVGVIAYILLCGSRPFWARTESGIFRAVLKATPSFDEPPWPSLSDEAKDFVKRLLNKDPRKRMTAAQALSHPWIKNYKDVKVPLDILVFKLMKTYMRSSSLRKAALRALSKTLATEELQYLKEQFALLEPNKTNTISLENIKAALMKNATDAMKESRILDFLASLNALQYRRMAFDEFCAAALSVHQLEALDRWEQHARCAYELFEKDGNRAIVIEELASELGLGPSVPVHAVLHDWIRHTDGKLSFLGFAKLLHGPSRSLAKPH* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01566 575 Gene3D - 402 563 - -
Lapu3g01566 575 FunFam CDPK-related kinase 1 115 210 - -
Lapu3g01566 575 SMART serkin_6 122 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01566 575 SUPERFAMILY Protein kinase-like (PK-like) 119 415 IPR011009 -
Lapu3g01566 575 FunFam CDPK-related kinase 1 421 493 - -
Lapu3g01566 575 ProSitePatterns Protein kinases ATP-binding region signature. 128 154 IPR017441 GO:0005524
Lapu3g01566 575 ProSiteProfiles Protein kinase domain profile. 122 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01566 575 CDD STKc_CAMK 121 383 - -
Lapu3g01566 575 Gene3D - 424 493 - -
Lapu3g01566 575 Gene3D Transferase(Phosphotransferase) domain 1 211 397 - -
Lapu3g01566 575 Gene3D Phosphorylase Kinase; domain 1 115 210 - -
Lapu3g01566 575 Pfam Protein kinase domain 123 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01566 575 MobiDBLite consensus disorder prediction 1 37 - -
Lapu3g01566 575 FunFam CDPK-related kinase 3 114 286 - -
Lapu3g01566 575 SUPERFAMILY EF-hand 412 565 IPR011992 -
Lapu3g01566 575 PANTHER SERINE/THREONINE-PROTEIN KINASE 109 550 - -
Lapu3g01566 575 FunFam Calcium-dependent protein kinase SK5 294 389 - -
Lapu3g01566 575 MobiDBLite consensus disorder prediction 1 45 - -
Lapu3g01566 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 246 258 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01566 Lapu-Chr3 19071537 19076871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01566 1 575 EF-hand Containing Proteins AT3G50530 71.880 0.0 908
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lapu3g01566 Pkinase 9.8e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01566 K00924 - gmx:100803313 1060.06