Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01552 ATGGTGGTGATTGATGAAAGAAACCGGGATCGTGTGAATAAGAGGGACGTGGTGGAGCTTCCACAATATGATCAAGTTGTGACTGTGGCATATTATGGGGAGGAGTTGCATGGGGCCGTACCTCTACCTCACTTCTCTAGAATCTCTCCTTTAAACATGGATAAACAAAACAAGGTGGTGGAGAATAAATACAAAATATTGAATAATAGTCAGACCAAACAAGAAACATCTACTGAGGCTCAAAAGTTTTCAAGTTCCATGAAGGTAGCAGTAGAAGGAACATCCTCTCGTGGTCAGGTCATGTCGTCCGCAGTTCTTCAAGCAGAGGAGGTCCAATCAAATTTGAGACCAGAATTTCCTAGTTTTGTGAAGTCTTTAGTTAGATCACATGTTGCTAGTTGTTTTTGGATGGGGCTTCCTGTGTCATTCTGCAAACGACATTTACCAGATAAGGATACAACAATCATTTTGGAAGATGAATCCGGCAAAGAATACAATACAAAATTCATTGCCTGTAAGATGGGACTGAGTGCTGGATGGAGACAGTTTTCTGCTGTGCACAAATTGCAAGAGGGTGATGCAGTGGTCTTCCAATTAGTTGAACCAACCAAATTTAAGGTTTATATAATAAGAGCTAATAATACGAGGGAACTAGATGGGGCCTTTCTCAATCTTGATAGTTGCACTAAACAAAAAATGGGAGGCAAAGATAACGGAAATACTGATGTTGTAACTTGTAATAGCTCAAAGAGAAAACCTGGAAAATATGTCCCACTAGATATCCAAAATACAAAGAAGGCAAACTTATCGAGATTGAGACCTATGGCCAGGCCATCAGTAGAACAATCTGAAAATGATAGTGAGGAAGCTCTCTCAGAAGTAATGGAGGAGTTTAAAATGCTTGAGTTTAAAGATGTGAGGGACTTTGAAAATTTTAGTATCATAGTTGATGGAGTGTCAATAGATACTGAATTCCCCATTGAGGTTAGAAACAAGTACTATAGGCTATGTTGCAGTCAACATGGATTTCTTCATGAGAATCTCATCAAGGGCATGAACTATAAGTTGATTTCTGGAGTTATATCTGAAACTGTCAACATTGCTGATGCCATAAAGGTTAGTGTGATGTGCACCCCACGATTTGAATTTGCTAACTGGGACAAAACTTTGCTTGCCTTTGAGCATCTAGGCATGAATGTTGACTTTTTAAGGGTCCGATTACGCCGACTTGTAAGCATTGCTTACGAGAAAAATGATGCCTTAGATGCCAAAAAGTACTTGGCATATAGAAATGAGTACAGTCGTGCAGATGACGAAATAAGAAATATGGAAGTCAAGCTCGAAGAATTGAAGGGAGCATGTAATGGTTTTGGTGCCTATCTTGGGAGTTTGAAGGGCAAAGCAGAAAACTATCAGATCAAGTTTCGAAGGGAGGTCGATGCTCCTTGGTGA 1452 0.3988 MVVIDERNRDRVNKRDVVELPQYDQVVTVAYYGEELHGAVPLPHFSRISPLNMDKQNKVVENKYKILNNSQTKQETSTEAQKFSSSMKVAVEGTSSRGQVMSSAVLQAEEVQSNLRPEFPSFVKSLVRSHVASCFWMGLPVSFCKRHLPDKDTTIILEDESGKEYNTKFIACKMGLSAGWRQFSAVHKLQEGDAVVFQLVEPTKFKVYIIRANNTRELDGAFLNLDSCTKQKMGGKDNGNTDVVTCNSSKRKPGKYVPLDIQNTKKANLSRLRPMARPSVEQSENDSEEALSEVMEEFKMLEFKDVRDFENFSIIVDGVSIDTEFPIEVRNKYYRLCCSQHGFLHENLIKGMNYKLISGVISETVNIADAIKVSVMCTPRFEFANWDKTLLAFEHLGMNVDFLRVRLRRLVSIAYEKNDALDAKKYLAYRNEYSRADDEIRNMEVKLEELKGACNGFGAYLGSLKGKAENYQIKFRREVDAPW* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01552 483 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 69 215 IPR044837 -
Lapu3g01552 483 Coils Coil 426 453 - -
Lapu3g01552 483 ProSiteProfiles B3 DNA-binding domain profile. 122 213 IPR003340 GO:0003677
Lapu3g01552 483 CDD B3_DNA 120 211 IPR003340 GO:0003677
Lapu3g01552 483 Gene3D - 101 215 IPR015300 -
Lapu3g01552 483 Pfam B3 DNA binding domain 122 212 IPR003340 GO:0003677
Lapu3g01552 483 SMART B3_2 122 213 IPR003340 GO:0003677
Lapu3g01552 483 SUPERFAMILY DNA-binding pseudobarrel domain 117 213 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01552 Lapu-Chr3 18745758 18749793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01552 104 228 B3 DNA Binding Superfamily AT3G19184 47.244 5.72e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu3g01552 B3 1.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01552 - - vra:106768002 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01552 3 18745758 18749793 Lapu3g01552 3 18745758 18749793 ECH