Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01547 ATGTCGCAGCGTTCTACGCCAGCGCCGTTTTTGACGAAGACGTATCTGTTGGTGGATGACCCTGCCACCGACGACGTTATTTCGTGGAGCGAAACGGGCAACACTTTTGTCGTTTGGAAACACGCGGATTTCGCTAAGGATTTGCTTCCCAAGTACTTCAAACACAACAATTTCTCCAGCTTCGTTCGCCAACTCAACACCTATGGGTTCCGAAAGATCGTTCCCGACAAATGGGAATTCGCCAACGAGTGTTTCAAGCGAGGGCAAAAGGAGCTCCTGGCCGAGATCAAGCGGCGGAAAACAGTGCTGCAATCTCCGGCGGCCGGAAAATCCAGCGGAGGGAACATCTCGGCGTCTCACTCCGGCGGCGACGACATGGGGTCGACGTCGACGGGGTCGGTGGAGGGTGCAACGACGACCCAGTGCGCGGATTTATCTGGCGAGAATGAAAAATTGAAGAAGGACAACGAGAAATTGAGCGGCGAGCTGGCGCGTGCGAAGAAGCAGTGCAACGAACTGGTGTCATTTCTAAGGGAGTCACTGAACGTGTGCCCCGATGTGATCAACCGCATCATTCGGCAAGGAACCTGTGGGTCCAGCGACGATGCGGTGCGTTTTGACTGTATTCGTGATGATGACGACGAAAATGCGGTAGGTGAGTGTGAACCCAAAGTGGATGATCACAGCGGGGGAGAAACTTTGAAACTGTTCGGTGTTTGGTTGAAGGGTCATAATGGGAATGAAAAAGATAAATTGAAGATTGGTAGTAACTGCCGCAAGAGAGGGCGCGATGACCCTATTGCCGGCACTGCCAAGGAGCTGAAAACCCTTGTGTAG 837 0.5293 MSQRSTPAPFLTKTYLLVDDPATDDVISWSETGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANECFKRGQKELLAEIKRRKTVLQSPAAGKSSGGNISASHSGGDDMGSTSTGSVEGATTTQCADLSGENEKLKKDNEKLSGELARAKKQCNELVSFLRESLNVCPDVINRIIRQGTCGSSDDAVRFDCIRDDDDENAVGECEPKVDDHSGGETLKLFGVWLKGHNGNEKDKLKIGSNCRKRGRDDPIAGTAKELKTLV* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01547 278 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu3g01547 278 Coils Coil 142 169 - -
Lapu3g01547 278 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 194 IPR027725 -
Lapu3g01547 278 MobiDBLite consensus disorder prediction 105 140 - -
Lapu3g01547 278 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu3g01547 278 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu3g01547 278 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu3g01547 278 FunFam Heat stress transcription factor B-4 2 100 - -
Lapu3g01547 278 MobiDBLite consensus disorder prediction 104 140 - -
Lapu3g01547 278 Gene3D - 2 101 IPR036388 -
Lapu3g01547 278 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu3g01547 278 SUPERFAMILY "Winged helix" DNA-binding domain 6 99 IPR036390 -
Lapu3g01547 278 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01547 Lapu-Chr3 18643195 18647089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01547 2 243 HSF AT4G36990 53.629 2.14e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lapu3g01547 HSF_DNA-bind 8.9e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01547 K09419 - gmx:100801897 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01547 3 18643195 18647089 Lapu3g01547 3 18643195 18647089 ECH
Lapu2g00567 2 4943845 4946634 Lapu3g01547 3 18643195 18647089 PCT