Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01542 ATGGATGTGGACATAGTGAAGTCTTCCGCGTGTGACACCACCAACATGGACGTGATGGCAATGATGATGCAAATGGAAAAGTTCCCTGAATTCTGCGACCCTTTTTATACCACCACCCCACCTTACACAGAAGCCGACATGATGTCAAGTGGAAGCTCCTCAACCAGCGTTTCCACCATTTTCAACAACGCAACTCCACCGACTCTCGTTGATCCACCACCGCCAAATGTTCTCAATTTTTCCAACAACGACAACAGCCTCATCCAGCAACCTATGACACCCTCTCTCCATCCCCCACAACCCAGCCCCACTTCCTTCCCCTACCCTTCTGAGAAGAAAAACTCCATGGCTGCGATGAGGGAAATGATATTCCGAATAGCGGTGATGCAACCGATTCACATAGACCCTGAATCCATAAAGCCACCGAAGCGGAGGAACGTGAAGATTTCGAAGGATCCGCAGAGCGTGGCGGCGAGGCACAGAAGGGAAAGGATAAGCGAGAAGATAAGAATTCTGCAGAGATTAGTCCCGGGTGGTACCAAGATGGACACGGCTTCGATGCTGGACGAGGCCATTCACTATGTCAAGTTCTTGAAGAAACAGGTGCAGACACTGGAACAAGCAGGGGCAAATAGACAACACAATCACAATAACGTTGGTGCTGTCGGTTTCCCAGTAGGGATGTCTAACTCCAACAACGTTAGCTATTCTTCTTTGTTGATGAAGGGTTGCCAACCTTGTCAAGTCTTCGGTTCTACTTCAAAACAATTGCTCAGCTAA 780 0.4872 MDVDIVKSSACDTTNMDVMAMMMQMEKFPEFCDPFYTTTPPYTEADMMSSGSSSTSVSTIFNNATPPTLVDPPPPNVLNFSNNDNSLIQQPMTPSLHPPQPSPTSFPYPSEKKNSMAAMREMIFRIAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGANRQHNHNNVGAVGFPVGMSNSNNVSYSSLLMKGCQPCQVFGSTSKQLLS* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01542 259 CDD bHLH_AtIND_like 150 206 - -
Lapu3g01542 259 SMART finulus 155 204 IPR011598 GO:0046983
Lapu3g01542 259 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 208 IPR036638 GO:0046983
Lapu3g01542 259 Coils Coil 188 208 - -
Lapu3g01542 259 Gene3D - 148 219 IPR036638 GO:0046983
Lapu3g01542 259 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 46 249 IPR045843 GO:0003700|GO:0006355
Lapu3g01542 259 Pfam Helix-loop-helix DNA-binding domain 159 198 IPR011598 GO:0046983
Lapu3g01542 259 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 198 IPR011598 GO:0046983
Lapu3g01542 259 MobiDBLite consensus disorder prediction 83 110 - -
Lapu3g01542 259 FunFam BHLH transcription factor 152 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01542 Lapu-Chr3 18450219 18450998 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01542 116 207 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 93.478 5.34e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu3g01542 HLH 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01542 - - gmx:100800816 333.183