Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01541 ATGGACTGGGTTCGAGGGGACCCCGTTGGCCGAGGGACTTTCGCCACCGTTAGTTTACTCATTCCGACAACCAATCCCTCTCTCTTTCCGTCTCTGACCGCCGTCAAGTCCTCCCAACCACTCACCTCGTGTTGGCTCAGGAACGAGAAACACGTGCTCGATCGCCTAGCTCCGTGTCCCAGGATTATTCGCTGTTTCGGAGACGACTACAGTTTCGAGAATGGTGTTGAGTACTACAATTTGTTCCTCGAATACGCAGCCGCTGGGAGTCTCGCAGACGAGGTAAACAATTGCGGTGGCCGGATTCCCGAGCCTGAGGTCCGGCGTTACACGAGGTCTATAGTGGAAGGCTTGAATCACGTGCATCAAAACGGGTTTGTCCACTGCGACATAAAGCTGCAAAACATCCTCGTATTCGAGGACGGGGAAATCAAGATTGCGGATTTCGGTCTGGCGAAGGAGGCAGGGGAGAGAAAACAGAGGAAGAGTGAATGCAGGGGGACTCCGCTGTTTATGTCGCCGGAGCAAGTGATCGACGGTGAGTGTGAGTCGCCGGCGGATATATGGGCTCTGGGATGCGCCGTTGTGGAGATGGTGACCGGGAAACCAGCGTGGGAGGTGGAGAAGGGGTCCAGTATGTGGTCCTTGTTGCTTCGAATTGGGGTGGGAGAAGAGATTCCCGAGATGCCTGAGAATTTGTCGAAAGAGGGGAAGGATTTTCTCGAGAAGTGTTTTGTTAAGGATCCTAAAAAGAGGTGGAGTGCAGAGATGCTTTTGAAACACCCTTTTGTTTCTGATGACACTGTTTTATTTAAGCGCGTTCACGAATCGCCCAGAAGTCACTTCGATTTCCCGGACTGGGTTTCTAGCGCGGCGTCTTCACTTCCCAGTTCGCCGGAATCTCAATCGCCGTGGAATTTTGATGAGTCGCGTTTGGAAGGTTTCTGCTCGCCGGAGGACCGGCTGCGTCGGATTTCGACCGTCAATCGGCCGGCGAGTTGGTCGGAATCAGATGGTTGGAGTAGTGTTAGGTGA 1035 0.5343 MDWVRGDPVGRGTFATVSLLIPTTNPSLFPSLTAVKSSQPLTSCWLRNEKHVLDRLAPCPRIIRCFGDDYSFENGVEYYNLFLEYAAAGSLADEVNNCGGRIPEPEVRRYTRSIVEGLNHVHQNGFVHCDIKLQNILVFEDGEIKIADFGLAKEAGERKQRKSECRGTPLFMSPEQVIDGECESPADIWALGCAVVEMVTGKPAWEVEKGSSMWSLLLRIGVGEEIPEMPENLSKEGKDFLEKCFVKDPKKRWSAEMLLKHPFVSDDTVLFKRVHESPRSHFDFPDWVSSAASSLPSSPESQSPWNFDESRLEGFCSPEDRLRRISTVNRPASWSESDGWSSVR* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01541 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Lapu3g01541 344 ProSiteProfiles Protein kinase domain profile. 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01541 344 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 296 - -
Lapu3g01541 344 Gene3D Transferase(Phosphotransferase) domain 1 2 282 - -
Lapu3g01541 344 FunFam Mitogen-activated protein kinase kinase kinase 17 2 291 - -
Lapu3g01541 344 CDD STKc_MAPKKK 2 264 - -
Lapu3g01541 344 SUPERFAMILY Protein kinase-like (PK-like) 3 304 IPR011009 -
Lapu3g01541 344 Pfam Protein kinase domain 6 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01541 344 SMART serkin_6 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01541 344 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01541 Lapu-Chr3 18407969 18409285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01541 1 344 MAP Kinase Kinase Kinase AT5G67080 49.311 2.15e-113 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lapu3g01541 Pkinase 6.3e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01541 - - gmx:100798607 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01541 3 18407969 18409285 Lapu3g01541 3 18407969 18409285 ECH