Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01537 ATGTCCATGCTTGAGTTCTGCACCTCCAAAACTCCACAACAAAATGCACTACGAGATGGGATCTCCGCCTACAATGGTTCTTCTGCATCCAACGCCTCTTCTTCCTCGGTGGCAGTGAATACGGAGAATGAAACCGATGACTACGACTGCGAGAGTGAGGATGGTGAACAGTTGGTAGAAGAGATTCCAATTCCACCGAAGTGCTTTCGTTCTGGGAGTTCATCCAAAAGAAGCAGAGCTGCGGAAGTTCATAACTTGTCCGAAAAGAGGAGGAGGAGTAGGATCAATGAGAAATTGAAGGCTTTGCAAAATCTAATTCCAAATTCTAACAAGACTGATAAGGCTTCAATGCTTGATGAAGCTATTGAATACCTTAAACAGCTTCAGCTCCAATACCAGATGCTGTCAATGAGAAATGGGTTGAGTTTGCATCCTATGTTCTTTCCAGAAGGGTTGCAACCACCGCAATTGTCTCAGATGAAAATGGATTCAAGTGAAGAAAACAGGTCTATCCCTTCTAACATTACTGCTACTCTACCTTTGCAACAAGAAAACCCCATGCCCTATTCATCCAATCTGCCTAACAAACACATTGTGGCAGATCAGCCATCCATGTCCACTCCATCATATATATTCAACTCAGAAACTTCTTTTAGACTGGAATCTCATATTCCTGGAAATATAAGATCTTTTCAACTCAGAAGTTTTTCTGAGATATGCAGAGAAGGCATATTGCAGCACCAACATTTAAATGCAAACCGTTCAGATACCAATCCATTAGGTTGTTCTCAAGGCACATTGACTACGGAATCACTTTCCTTTGATATGCAAAAATCTGCAGTTAAAGACAACAGCTCTTTGGAAAACTTCATCCCTGGAAGTGATCAATCTGGAGTGGTGTTGACAAATAGTGAGCCCAACGTTATTCTGACCCACCGATTAAGTGGGTAA 951 0.4196 MSMLEFCTSKTPQQNALRDGISAYNGSSASNASSSSVAVNTENETDDYDCESEDGEQLVEEIPIPPKCFRSGSSSKRSRAAEVHNLSEKRRRSRINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQYQMLSMRNGLSLHPMFFPEGLQPPQLSQMKMDSSEENRSIPSNITATLPLQQENPMPYSSNLPNKHIVADQPSMSTPSYIFNSETSFRLESHIPGNIRSFQLRSFSEICREGILQHQHLNANRSDTNPLGCSQGTLTTESLSFDMQKSAVKDNSSLENFIPGSDQSGVVLTNSEPNVILTHRLSG* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01537 316 SMART finulus 85 134 IPR011598 GO:0046983
Lapu3g01537 316 CDD bHLH_AtPIF_like 80 141 IPR047265 -
Lapu3g01537 316 MobiDBLite consensus disorder prediction 1 43 - -
Lapu3g01537 316 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 24 238 IPR031066 -
Lapu3g01537 316 Coils Coil 118 138 - -
Lapu3g01537 316 Gene3D - 74 138 IPR036638 GO:0046983
Lapu3g01537 316 MobiDBLite consensus disorder prediction 1 92 - -
Lapu3g01537 316 Pfam Helix-loop-helix DNA-binding domain 83 129 IPR011598 GO:0046983
Lapu3g01537 316 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 139 IPR036638 GO:0046983
Lapu3g01537 316 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 79 128 IPR011598 GO:0046983
Lapu3g01537 316 MobiDBLite consensus disorder prediction 44 58 - -
Lapu3g01537 316 FunFam Basic helix-loop-helix transcription factor 74 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01537 Lapu-Chr3 18345148 18349414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01537 43 277 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 50.000 5.62e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu3g01537 HLH 1.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01537 - - vun:114177198 468.003