Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01536 ATGTGCTTTTTATCTAAAGGTGGCTCAGGTGGACGAGCTAATGCAAACAATCAAAATTATTGGAGCCCTCACCTTCCAAGTCAAACACAGGAGAGGCTGCTTCCACTATTTCCAGTCATTGCTACCGAGGAAGGGTTCCTTGGGTTTCCTCAACAAGGAGTCAACAACAATGGTCCAAATGTTCTTCGTGAAACTCCTAATGTTGTAGCATCGGGATCAAACATTTTCTCTTCAAGTTCCCTTTCTGGAACTCCTCCAAATCGTTCGGCAAATTTAGATTTGTCTCTGGAAATGGGCTTAAGCGGTCAGGGTGCAACTACATCTCATGCTGTGATTCAAAGTAGCAGTGCTGCACCTAGCGTGCATGGAAGCAACTCGAACACCGTCAACTCATCAAGAAAAAGAAGTCTCCCTGGAAATGCTCCTGGAAATGCTTCTGGAAATGCTTCTGGACATACCGAAGAGCCGAAAAGACCTGATACTGAGCCTGAGGCGAGAGCTACCCACAATGTGATTCCACAGAACGCAGGGAGAAGTATTCCACCAACCAACACGAGAGGTGACTGGATGGATAATACTAATCAAACAAGAGGTTCTCTTGCCCAACCTTTTATTCCAACACATCCCCATCACTCTCCTCTCCAACCCTCACCTTCCGTTCAGCCTCTAGCTTTTCACAGTGGCCCATTCATGCCTACTCCTGCCTCCACTGCAAACACCATAACCGCGAGGAATGCTCCTTACTCAATTTTCTCCCCCTTTCCACCCGCTGGAGTTGATATTATGATTCCATTTTATGAACATGGGAACATGTTTGGTCCTGTCATCACATCTATGGGTAATTTTCCCACTTATCGACCAAACAGGTCTTACCTTCATCCTGATGGAGATACTGCTAGAAGGGCTCTTTCTTTTGTTCTCCCCCATCATTTCGAACCCCCGGAACCAATGCAATTACTACCTGGAATTGTGGGCAATGGTGGCATTGTTAGTAATGCTCCAGGGAATATGTACCACCCTCTGAGAGATTATCCTAGCTCTTCAACTTGGTGGTTTCCTCCACAGGGCCCACAAGTAATGCACCATTCTGCTGCAGCAAGTAGTTCTGGCTCTCCGAACCACCATAGTCTTATGCGGGTATCACCATCTGCAACTCCACCCAATGGTATTCATGAACCCGCGTTTCCGCTACCACAATTTCCTTCTGAGGAAACGAGAAGAAGGCTTCCAAATGATGTTCGATCTATCCTTGATTCTTTACGCAATGGTCACGCTCTGAGGTTCGAGGACTTGATGATCCTTGACTACTCGCTTGTGTTACGTGCGTTTGAGATAGAGCACCCTGAACTATTTGAGACATCGCGATCCTCGGGACTGAGTCTGGAAACGATAACGCAATACATGGAGTGTGAGACTTTCTTGGTTATTGATGGAGGTGATTCAGAAGAAACTAGAGAAAGATGCCCCATATGCTTGGAGGAATTTGACAACGGAGAAGAAATTGGGAAGCTGAATTTATGTGTGCACAAGTTTCACCTTGATTGCATAAAAAATTGGCTCAACCGGAAGAACCTTTGCCCCGTCTGCAGAAGAACTGCGTTGGAAACGCATGATGACCAAAATGTAGGAGGTAGAGCTGCAGCTGGAGCTGTACTTCACATTGAAGATGGCAGTGAATAG 1680 0.4625 MCFLSKGGSGGRANANNQNYWSPHLPSQTQERLLPLFPVIATEEGFLGFPQQGVNNNGPNVLRETPNVVASGSNIFSSSSLSGTPPNRSANLDLSLEMGLSGQGATTSHAVIQSSSAAPSVHGSNSNTVNSSRKRSLPGNAPGNASGNASGHTEEPKRPDTEPEARATHNVIPQNAGRSIPPTNTRGDWMDNTNQTRGSLAQPFIPTHPHHSPLQPSPSVQPLAFHSGPFMPTPASTANTITARNAPYSIFSPFPPAGVDIMIPFYEHGNMFGPVITSMGNFPTYRPNRSYLHPDGDTARRALSFVLPHHFEPPEPMQLLPGIVGNGGIVSNAPGNMYHPLRDYPSSSTWWFPPQGPQVMHHSAAASSSGSPNHHSLMRVSPSATPPNGIHEPAFPLPQFPSEETRRRLPNDVRSILDSLRNGHALRFEDLMILDYSLVLRAFEIEHPELFETSRSSGLSLETITQYMECETFLVIDGGDSEETRERCPICLEEFDNGEEIGKLNLCVHKFHLDCIKNWLNRKNLCPVCRRTALETHDDQNVGGRAAAGAVLHIEDGSE* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01536 559 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 67 534 IPR045191 GO:0061630
Lapu3g01536 559 ProSiteProfiles Zinc finger RING-type profile. 488 530 IPR001841 -
Lapu3g01536 559 SMART ring_2 488 529 IPR001841 -
Lapu3g01536 559 MobiDBLite consensus disorder prediction 172 188 - -
Lapu3g01536 559 MobiDBLite consensus disorder prediction 105 151 - -
Lapu3g01536 559 MobiDBLite consensus disorder prediction 105 188 - -
Lapu3g01536 559 MobiDBLite consensus disorder prediction 361 383 - -
Lapu3g01536 559 Pfam Ring finger domain 487 530 IPR001841 -
Lapu3g01536 559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 478 548 IPR013083 -
Lapu3g01536 559 SUPERFAMILY RING/U-box 481 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01536 Lapu-Chr3 18336866 18341336 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01536 406 536 C3H Transcription Factor Family AT2G15530 32.237 1.70e-18 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01536 - K10635 vra:111241966 412.535