Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01534 ATGAGTTCAGGCAGTAGTCACATTACTGATTTTACTTTGAATCTTCGGCTTTCAAGAATGAATTCTCAAGGTGGCTCGGTTGGAGAAGCTAACGAAAACAACCAACATGAGGAAGGGATCCTTGAAGGGCTTCCTCAGCCAGAAGTGAATCTCCCTCAACAAGGTGACAACAACAATGGTACCAGCAGCACTGATGTTCCTCTTCATCAGACCTTCAATGCTGAAGCACAGGATTCTAACATTTCCTCTTCAAGCTTCCATGTTGGAAGCAGCTCGAACACCGTGAACATTCCAAGAAAAAGAAGCTTCAGTCCTTCTGGACAATTTCATCCGGGTGAAAGTTCAAATATGGGTCAACAAGAGAGAGGAGGGGCTAAAAGACATGCTACTGAGTCTGAGGTTGGAGCTAACAACAATGTGAACCCACAGAATAGAGGAACACCTATTCCACCACCCAATACGGGTGCTAACAGGAACGAGAACACTCACACTGGGAGAAGAGCTTCTCAGGCTCCACTACCAAGCCAAGCGAGTTTGTATTTCAACAGAGCTTCAACACATTCCGTTCAGTCTTCTTTCCAACGTTCACATCCTGCTCAGCCTATATCTCTTGACGGTGGTTCATTCATGTCCAGTGCTACCTCCACTGTTAACAACATCACCGTGAGGACTACTCCTCCCACCCGCTGTCCACACACAAGAGTTGATATTATAATTCCATTTTATGAACATGGTACCTCTTCAACTTCGGCTCCGCCACAGGGCTCACCAGGAATGAATCATTCTGCTGCAGCAAGTAGTTCTGGCACTCAGAACCATCCAACTCCTCAGCAAACATCAACATCTGCAATTCCACCTGATATTATTTCTGCAGAAATCAGAAGAAGGCTTCCACCTGAGGTCCGATCTATCCTGGACTCTCTAAGAAATGGTCGCGGTCTAATCTTTGAGATAGAGAGCCCTGAACCACCTACGGGACTAAGTCTCGAAACGATCATGGAACGCTTGGAACGTGAGATTTTCCTGGATGTTGATGGAGATGGTCCAGACCAAGATCAACAAAAATGCACTATCTGTTTAGAAGACTTTGACAAAGGATCGGAAATGGGGAAGCTACATTTATGTGACCACAAGTTTCACTTTGATTGCATCAAAGAGTGGCTCATGCAGAAGAACCTTTGCCCCGTGTGCAGAAGAGTTGCGTTGGACATGCATAATAACCAAAATGCGGAATATGGTCATTACTTTCTGTAA 1254 0.453 MSSGSSHITDFTLNLRLSRMNSQGGSVGEANENNQHEEGILEGLPQPEVNLPQQGDNNNGTSSTDVPLHQTFNAEAQDSNISSSSFHVGSSSNTVNIPRKRSFSPSGQFHPGESSNMGQQERGGAKRHATESEVGANNNVNPQNRGTPIPPPNTGANRNENTHTGRRASQAPLPSQASLYFNRASTHSVQSSFQRSHPAQPISLDGGSFMSSATSTVNNITVRTTPPTRCPHTRVDIIIPFYEHGTSSTSAPPQGSPGMNHSAAASSSGTQNHPTPQQTSTSAIPPDIISAEIRRRLPPEVRSILDSLRNGRGLIFEIESPEPPTGLSLETIMERLEREIFLDVDGDGPDQDQQKCTICLEDFDKGSEMGKLHLCDHKFHFDCIKEWLMQKNLCPVCRRVALDMHNNQNAEYGHYFL* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01534 417 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 39 402 IPR045191 GO:0061630
Lapu3g01534 417 MobiDBLite consensus disorder prediction 50 121 - -
Lapu3g01534 417 Pfam Ring finger domain 355 398 IPR001841 -
Lapu3g01534 417 SUPERFAMILY RING/U-box 350 409 - -
Lapu3g01534 417 ProSiteProfiles Zinc finger RING-type profile. 356 398 IPR001841 -
Lapu3g01534 417 MobiDBLite consensus disorder prediction 244 284 - -
Lapu3g01534 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 327 402 IPR013083 -
Lapu3g01534 417 SMART ring_2 356 397 IPR001841 -
Lapu3g01534 417 MobiDBLite consensus disorder prediction 46 172 - -
Lapu3g01534 417 MobiDBLite consensus disorder prediction 132 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01534 Lapu-Chr3 18304665 18309156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01534 325 402 C3H Transcription Factor Family AT2G15530 40.000 4.11e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01534 - - vun:114179757 518.464