Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01525 ATGTGGGATCTCAATGACTCACCCGATCAGAGGAAGGACGAGGAATCCGAAGGGTGTTCTTCCCTCAAGACTTCCATCGACGGGGACGATGAGAACAACAAAGGCAAAAGGGTTGGATCTGTTTCCAATTCCAGCTCTTCAGCTGTGGTAATCGAGGACGGATCAGAGGAGGAGGAGGACGAAGAGGAGGAAGACGAAGAAGGTGGCAGAAGAAGCATGAAGAAACGAAACAACAAGATTTTCGGGTTCTCTGTGACCCAAGATTATGAGTCCATGGACAGTGACCACCCACCTGTGACAAGACAGTTTTTTCCGGTTGAAGAGGCTGACGTGGCGGTTGCATCGGGTGGTGGAAGCTCCACCTTCCCTCGTGCTCACTGGGTAGGTGTGAAATTTTGCCAATCAGAAGCACTTGGTGCTGGAAAGTCAGTTGAAGTCTCTCAGCCTATGAAGAAGAGTCGGCGAGGACCAAGGTCAAGGAGTTCTCAGTATAGAGGAGTCACCTTTTACAGAAGAACGGGTCGGTGGGAGTCTCATATATGGGACTGTGGAAAACAAGTGTATCTAGGTGGATTTGACACAGCACATGCGGCTGCTCGTGCCTACGATCGTGCGGCCATCAAGTTCCGAGGAGTCGAGGCCGACATAAACTTCAATATTGAAGATTATGAAGACGACTTGAAGCAGATGAGCAATCTTACCAAGGAAGAGTTCGTCCACGTGCTTCGCCGACAAAGCACAGGATTTCCGAGGGGAAGCTCAAAATATAGAGGTGTAACATTGCATAAGTGTGGAAGATGGGAAGCTCGAATGGGTCAATTTTTAGGGAAAAAGTACGTTTATTTGGGTCTCTTTGACACCGAGATTGAAGCTGCAAAGGCTTATGACAAAGCAGCCATCAAATGCAACGGCAAAGAGGCCGTAACCAATTTTGATCCCAGCATCTATGAGAACGAGCTTAACTCCGGAGCAGAATCCACAGGTAACGCTGCAGATCACAATCTGGACTTGAGTTTGGGAAATTCAAGTTCAAAGCCTGGCAATAATCAAGCGTTGGGGAATCACGCCACAAATGCTGCAAATCAGGATCAACACCTCCCATCTGAATCTAATTGGCGAAATGGGGGGAGCAAGCCTAAGCTGGTGAATATACTACCAAAACCATGTAATAGAGGCAACAAGGACACGCATGGAAGGGATTTGCACGGGGAGAATGAAGCATTGAGGATGCTAAGTCAAACCCACCTTCATTCTCCAGCCTCCAGTGAAATGCAAAGATATGGTCCCTACAGGTCTCCCGGAGGAGAGTCTCAAATGCTTCAGAATTTTGCTCCCATTCACCCACCAAATTTTCATTTTCCCAGCAGCAGCATTGGAGGCCGTATTGGAAGTGATCTTTCGTTGTCAATGGCCGATCAACAACAGTGGCAATCCGGGCCTCCACATTATTTAGCAACTGCTGCAGCATCATCAGGATTCCCACTACAGATAAGACCCTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACTCTCATGAGACCCTCATGA 1554 0.4813 MWDLNDSPDQRKDEESEGCSSLKTSIDGDDENNKGKRVGSVSNSSSSAVVIEDGSEEEEDEEEEDEEGGRRSMKKRNNKIFGFSVTQDYESMDSDHPPVTRQFFPVEEADVAVASGGGSSTFPRAHWVGVKFCQSEALGAGKSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAAKAYDKAAIKCNGKEAVTNFDPSIYENELNSGAESTGNAADHNLDLSLGNSSSKPGNNQALGNHATNAANQDQHLPSESNWRNGGSKPKLVNILPKPCNRGNKDTHGRDLHGENEALRMLSQTHLHSPASSEMQRYGPYRSPGGESQMLQNFAPIHPPNFHFPSSSIGGRIGSDLSLSMADQQQWQSGPPHYLATAAASSGFPLQIRPSSQGWLQKNGFHTLMRPS* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01525 517 MobiDBLite consensus disorder prediction 1 20 - -
Lapu3g01525 517 CDD AP2 254 314 IPR001471 GO:0003700|GO:0006355
Lapu3g01525 517 SUPERFAMILY DNA-binding domain 162 220 IPR016177 GO:0003677
Lapu3g01525 517 MobiDBLite consensus disorder prediction 322 377 - -
Lapu3g01525 517 MobiDBLite consensus disorder prediction 37 51 - -
Lapu3g01525 517 MobiDBLite consensus disorder prediction 322 399 - -
Lapu3g01525 517 FunFam AP2-like ethylene-responsive transcription factor 162 221 - -
Lapu3g01525 517 SUPERFAMILY DNA-binding domain 254 314 IPR016177 GO:0003677
Lapu3g01525 517 Pfam AP2 domain 163 211 IPR001471 GO:0003700|GO:0006355
Lapu3g01525 517 Pfam AP2 domain 254 303 IPR001471 GO:0003700|GO:0006355
Lapu3g01525 517 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 94 409 - -
Lapu3g01525 517 CDD AP2 163 220 IPR001471 GO:0003700|GO:0006355
Lapu3g01525 517 ProSiteProfiles AP2/ERF domain profile. 255 312 IPR001471 GO:0003700|GO:0006355
Lapu3g01525 517 ProSiteProfiles AP2/ERF domain profile. 163 219 IPR001471 GO:0003700|GO:0006355
Lapu3g01525 517 SMART rav1_2 255 318 IPR001471 GO:0003700|GO:0006355
Lapu3g01525 517 SMART rav1_2 163 225 IPR001471 GO:0003700|GO:0006355
Lapu3g01525 517 PRINTS Ethylene responsive element binding protein signature 294 314 IPR001471 GO:0003700|GO:0006355
Lapu3g01525 517 PRINTS Ethylene responsive element binding protein signature 256 267 IPR001471 GO:0003700|GO:0006355
Lapu3g01525 517 MobiDBLite consensus disorder prediction 1 75 - -
Lapu3g01525 517 Gene3D AP2/ERF domain 162 221 IPR036955 GO:0003700|GO:0006355
Lapu3g01525 517 Gene3D AP2/ERF domain 254 313 IPR036955 GO:0003700|GO:0006355
Lapu3g01525 517 MobiDBLite consensus disorder prediction 52 66 - -
Lapu3g01525 517 FunFam AP2-like ethylene-responsive transcription factor 254 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01525 Lapu-Chr3 18061019 18066543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01525 1 352 AP2-EREBP Transcription Factor Family AT4G36920 66.757 4.28e-136 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lapu3g01525 AP2 5.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01525 K09284 - gmx:100792442 881.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01525 3 18061019 18066543 Lapu3g01525 3 18061019 18066543 ECH
Lapu2g00547 2 4723732 4727623 Lapu3g01525 3 18061019 18066543 PCT