Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01523 ATGGAACAAGGAGAAGGAGGAAGCACAAGGAGGAGAGGTAAAGAGGGTGAGACTACGCGCTATAAAGGAATCAGGATGAGGAAGTGGGGCAAGTGGGTCGCTGAGATTCGAGAACCCAACAAGCGTTCACGGATTTGGCTCGGTTCCTATTCCACACCCGTTGCGGCCGCGCGTGCGTACGACACCGCCGTCTTCTATCTCCGGGGACCCTCCGCCCGCCTCAACTTTCCTGACCTTCTTGCCGTTGAGGGCCCTGCAGACCCTTCCGACATGTCTGCTGCCTCCATCAGAAAGAAGGCCACCGAGGTCGGCGCCAGAGTGGACGCGCTTCACCGTCGGCACCCGCACGCTCCTGCTGGAGAATTTGCCGACCGGGTTGACCTCAATAAGATGCCCGAACCCGAAAATTCGGATTGTGACTGGGACGGTGATTAG 435 0.5839 MEQGEGGSTRRRGKEGETTRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLAVEGPADPSDMSAASIRKKATEVGARVDALHRRHPHAPAGEFADRVDLNKMPEPENSDCDWDGD* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01523 144 MobiDBLite consensus disorder prediction 105 137 - -
Lapu3g01523 144 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Lapu3g01523 144 CDD AP2 19 79 IPR001471 GO:0003700|GO:0006355
Lapu3g01523 144 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 138 - -
Lapu3g01523 144 MobiDBLite consensus disorder prediction 1 20 - -
Lapu3g01523 144 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Lapu3g01523 144 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Lapu3g01523 144 PRINTS Ethylene responsive element binding protein signature 59 79 IPR001471 GO:0003700|GO:0006355
Lapu3g01523 144 Gene3D AP2/ERF domain 19 78 IPR036955 GO:0003700|GO:0006355
Lapu3g01523 144 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Lapu3g01523 144 MobiDBLite consensus disorder prediction 105 144 - -
Lapu3g01523 144 Pfam AP2 domain 19 69 IPR001471 GO:0003700|GO:0006355
Lapu3g01523 144 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01523 Lapu-Chr3 17991804 17992674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01523 21 142 AP2-EREBP Transcription Factor Family AT5G67190 57.407 5.20e-54 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu3g01523 AP2 3.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01523 K09286 - gmx:100784157 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01523 3 17991804 17992674 Lapu3g01523 3 17991804 17992674 ECH