Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01520 ATGCATCGTCCAACCACAGCGGCAACAGCAGCCCTCCTCCCTCTGCTGCTACAGATAATCACCATGGCCTCTTGCGGCGGCCCCACGCTGTCCTCCGACGCGGTGTGGTTGCTCACGTTTAAACGGGAAGCGGACCAAGACAACAAGCTCCTCTACACGCTGAACGAGCCCTACGACTACTGCGAGTGGGAGGGCGTGAAGTGCGCACAAGGGAGAGTAGTCCGGTTCGTGGTCCAGTCCATGGGCCTGCGCGGCCCATTCCCTCCGGCCACACTGACGAAACTGGACCAGCTCCGCGTCATGAGCCTCCGCAACAACTCCCTCTTCGGGCCCATCCCCGATCTCTCCCCTCTCACCAACCTCAAATCCCTCTTCCTCGACCACAACAACTTCTCCGGTTCCTTCCCTCCCTCTCTTCTACTCCTCCACCGCATCCTCACTCTCTCCCTCTCCCACAACAACCTCTCCGGTTCGCTCCCTGCTGGGCTCACTCTCCTCGACCGTCTCATCGCACTCCGCCTCGACTCCAACAACTTCTCCGGCACGCTCCCTCCTCTCAACCAAACCGCGCTCAAACTCCTCAATGTCTCCAACAACAACCTCACTGGTCCTGTTCCCGTCACCCCCACCCTCTCTAAACTCAACGCTGCCTCCTTTTCGGGAAACCCTAGCCTCTGCGGGGAGATTGTTCACAGAGAGTGTGATCCACGCTCCCGCTTCTTCGGCCCCGCCACGTCATCCTCCACGGCTCCGTTGAGCCAGAGCGAACAGTCTCAGGGTATTTTGGTTGTGCCTGCCTCCACCGAAACAAAGCGTCATCGAAATACTGGGCTAGTGGTTGTAGGTTTTGTTGTGACGGTTGTTCTTGTGAGTGTTTGTGTTGTGTCTGTGGTCTCGCTGGTCAGAAGGAGGCAGGCGGCGGCGGCGGGGAAAGCGGTGGTTCTGGAGGGGGATGAGGGGGAGGGGGGTGTAGAGGAGGGGGAGAGAGAAGTGAAGGTGAGGAGGATGGAGGAAGCGCACAGGAGTGGGAAGCTGGTGTTCTGCTGCGGGGAGGTGCAGCAGTATACGCTGGAGATGCTGATGCGGGCTTCGGCGGAGTTGCTGGGGAGAGGGAGCGTGGGAACGACGTACAAGGCGGTGCTGGATTCGCGGTTGATTGTTACGGTGAAGAGGGTGGATGGGGGCAAGAGTGGTGGAAGTGATGGGGTAGTGTTTGAGCGCCACATGGAGGCTGTGGGAAGGCTTCAGCACCCCAATTTGGTGCCTTTGAGGGCTTATTTTCAGGCCAAGGGAGAGAGGCTTGTCATATATGATTATCAGCCCAATGGCAGCCTCTTCAACCTCGTTCACGGTTCAAGATCCGCGAGGGCGAAGCCTTTGCATTGGACATCATGCTTGAAAATAGCCGAAGATGTGGCACTCGGACTTGCTTATATACATCAAGTTTCAACTCTAATTCATGGCAACCTAAAATCTTCAAACGTCCTTCTTGGGACGGACTTTGAAGCTTGTATTACGGACTATTGTTTGGCCTTCTTTGGGGATTCTTCGTTCACCGAAGATCCCGATTCTGCGGCTTATAGAGCACCTGAGGCTCGCAACTCTAGCCGCAGAGCCACTTCCAAGTCTGATGTGTATGCTTTTGGAGTGCTTCTACTAGAGCTTTTGACGGGCAAACACCCTTCACAACAACCTTTTCTTGCACCAGCTGATTTGCAAGATTGGGTGAGAGCAATGAGGGATGATGATGGCAGTGAAGACAACAGGCTAGAGATGCTCACGGAGGTTGCCAGTATTTGCAGTGCAACCTCGCCGGAGCAGAGGCCAGCAATGTGGCAAGTCCTTAAGATGATACAGGGAATAAAGGACAGCGTTTCAATGGAGGATACTTCATTTACTGGGCTCTCATAG 1911 0.5552 MHRPTTAATAALLPLLLQIITMASCGGPTLSSDAVWLLTFKREADQDNKLLYTLNEPYDYCEWEGVKCAQGRVVRFVVQSMGLRGPFPPATLTKLDQLRVMSLRNNSLFGPIPDLSPLTNLKSLFLDHNNFSGSFPPSLLLLHRILTLSLSHNNLSGSLPAGLTLLDRLIALRLDSNNFSGTLPPLNQTALKLLNVSNNNLTGPVPVTPTLSKLNAASFSGNPSLCGEIVHRECDPRSRFFGPATSSSTAPLSQSEQSQGILVVPASTETKRHRNTGLVVVGFVVTVVLVSVCVVSVVSLVRRRQAAAAGKAVVLEGDEGEGGVEEGEREVKVRRMEEAHRSGKLVFCCGEVQQYTLEMLMRASAELLGRGSVGTTYKAVLDSRLIVTVKRVDGGKSGGSDGVVFERHMEAVGRLQHPNLVPLRAYFQAKGERLVIYDYQPNGSLFNLVHGSRSARAKPLHWTSCLKIAEDVALGLAYIHQVSTLIHGNLKSSNVLLGTDFEACITDYCLAFFGDSSFTEDPDSAAYRAPEARNSSRRATSKSDVYAFGVLLLELLTGKHPSQQPFLAPADLQDWVRAMRDDDGSEDNRLEMLTEVASICSATSPEQRPAMWQVLKMIQGIKDSVSMEDTSFTGLS* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01520 636 Gene3D Transferase(Phosphotransferase) domain 1 441 633 - -
Lapu3g01520 636 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 15 624 IPR046959 -
Lapu3g01520 636 FunFam Leucine-rich repeat receptor-like protein kinase 144 236 - -
Lapu3g01520 636 FunFam Probable inactive receptor kinase At5g67200 32 142 - -
Lapu3g01520 636 Gene3D Ribonuclease Inhibitor 31 188 IPR032675 -
Lapu3g01520 636 ProSiteProfiles Protein kinase domain profile. 362 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01520 636 Pfam Protein kinase domain 365 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01520 636 Gene3D Ribonuclease Inhibitor 189 238 IPR032675 -
Lapu3g01520 636 Gene3D Phosphorylase Kinase; domain 1 326 439 - -
Lapu3g01520 636 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Lapu3g01520 636 SUPERFAMILY Protein kinase-like (PK-like) 366 623 IPR011009 -
Lapu3g01520 636 SUPERFAMILY L domain-like 29 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01520 Lapu-Chr3 17905287 17908028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01520 30 629 Receptor kinase-like Gene Family AT3G50230 53.566 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lapu3g01520 Pkinase 1.1e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01520 - - gmx:100783086 938.332