Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01516 ATGGCCGTGGAGCTCATGACGACGGGCTACACAACCACCACTTTCACGACCAAAGCCGAGGAAAATGCCGTCCAGGAAGCCGCTTCCGGTTTAGAAAGCGTCGAGAAGCTCATCAGACTCCTCTCTCAGACCCCCCAACAATACAACTCCTCCAATCAAATCGCCATCGACTGCAAGGCTGTCGCTGACCTCGCAGTTTCCAAGTTCAAAAACGTCATTTCCCTCCTCGGCCCAACCCCAGGCCCAGCCCCGACCCCAACCCCAACCGGTCACGCCCGCTTCCGAAGAGCCCCTCTCCCTCCTCCTCCGCCTCCTCCTCCCACACAACCCTCCCAACCTCTCGTCTTCCACGCCACCCCTCTGCACCAAATCCCCAAAACAGACAACACCCTCAACGACCCATCTTCCAAAACCATTCATTTCTCCTACCCCTCCTCCGCCACTTCCTTCATCTCCTCCCTCACCGCCGACGCCCACACCAAACAACCCTCTTCCTCCTCGTCGCCCCCGCCTGCGCCAGGGACTTTCCACATCACCGCTCTCTCCCACGTCTCATCCGCGGGGAAGCCTCCCCTCTCCTCCTCCTCCTCTTTCAAGAGGAAGTGCAGCTCTGAGAACTTGCCTTCTGGAAAGTGCGGTAGCTCCTCTAGCCGCTGTCATTGCTCCAAAAAGAGTAGGAAAATGAGGTTGAAGAGGGTGGTGAGGGTACCGGCTATAAGCTTGAAGATGGCTGATATTCCACCTGATGATTATTCTTGGAGGAAGTATGGTCAGAAACCAATCAAAGGATCTCCTCATCCAAGGGGTTACTACAAGTGCAGTAGCGTTAGAGGGTGTCCAGCGCGGAAGCATGTGGAACGAGCTTTGGATGATCCAGCTATGCTGGTGGTAACCTATGAGGGGGAGCACAATCACACTCTCTCTGCGGCTGATGCTACTAACCTTATTCTAGAATCGTCTTGA 963 0.5545 MAVELMTTGYTTTTFTTKAEENAVQEAASGLESVEKLIRLLSQTPQQYNSSNQIAIDCKAVADLAVSKFKNVISLLGPTPGPAPTPTPTGHARFRRAPLPPPPPPPPTQPSQPLVFHATPLHQIPKTDNTLNDPSSKTIHFSYPSSATSFISSLTADAHTKQPSSSSSPPPAPGTFHITALSHVSSAGKPPLSSSSSFKRKCSSENLPSGKCGSSSSRCHCSKKSRKMRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPAMLVVTYEGEHNHTLSAADATNLILESS* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01516 320 Pfam WRKY DNA -binding domain 249 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu3g01516 320 SUPERFAMILY WRKY DNA-binding domain 244 307 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu3g01516 320 Pfam Plant zinc cluster domain 199 245 IPR018872 -
Lapu3g01516 320 MobiDBLite consensus disorder prediction 156 177 - -
Lapu3g01516 320 ProSiteProfiles WRKY domain profile. 242 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu3g01516 320 SMART WRKY_cls 247 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu3g01516 320 MobiDBLite consensus disorder prediction 95 113 - -
Lapu3g01516 320 MobiDBLite consensus disorder prediction 75 114 - -
Lapu3g01516 320 Gene3D WRKY domain 234 308 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu3g01516 320 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 24 313 IPR044810 GO:0003700
Lapu3g01516 320 FunFam WRKY transcription factor 65 231 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01516 Lapu-Chr3 17862350 17864378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01516 20 305 WRKY Transcription Factor Family AT2G24570 47.134 2.52e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lapu3g01516 WRKY 4.4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01516 - - vum:124838807 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01516 3 17862350 17864378 Lapu3g01516 3 17862350 17864378 ECH