Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01511 ATGGAAGACAAGATAGAGACTGCAGACAAGAAGGTGCTGGTTGACATTGTAAAATTGGTACAAAAAAGAGGCCTAAAGGGTAAGCTAGGAGGCTGGAAAGAATTCTTGGACAGCCATGACAGAAGGTTTGGGGCCAATTTGAGTGATCCATCAAAGCGATCCCATGAGATATTGGCTGCATTTCTAAAGACATTTTCGGAGGAGGAAGATTTGAAGTTTTTTGATAACATCATGCGACATCATGCTAATCAATACACGTTGGAGCGACTGAAAGATAAATCCCTTGAGTCGCCAGAGCAGAGGCTAGTTCAAATAACTCTGCAGCATCCATTATATCCACTGGACTATTCATTTCCATCAATTGATGAGGGGTGGATAGTTGTAAATGTTAAAACCAAACCCAAGGTGATGAAGTCTACTAAAATGCTTGCTGTTGATTGTGAAATGGTTCTTTGTGAAGATGGGACAGAAGCGGTTGTTAGAGTCTGTGTGGTAGACCATAATTTAGAGGTCAAACTAAATGAATTTGTGAAACCCGACAAAAAAATTGTGGACTACAGAATAGATATCACTGGTGTCTCTTCTCAAGATCTGGAGTCAGTGACTTGCTCCTTGGCAGATGTACAGAAATCCATGAAGAAGTTGTTATCAAATGGAACCATATTAGTGGGACACTGTTTGCATAATGATCTACGTGTGCTGAAGCTTGATCATGTCAGAGTGATTGACACTGCCTATATCTTCCAATCCTTGGATGGATCTACGCACAGAAGACCTTCTTTGAATGGTTTATGTCAGGCTGTGTTGGGTTCTGGTGTACGGGAAAAAGGTGCTACACATAATTGTCTAGATGATGCGTGTGCAACTATGAACCTCGTCCTTGCGAAGATTAAACATGGTGTTGATAAGGAATTCCCAATTTCATTGGTTCAAGAGCATGTTCCAGTGGTTCCAGAAAGTGAGATGGCAAAGCTGTTTCTTCACAAGATACCAAACACTGTAAACACTGAAGCACTGCATAAAATTGTTCCTGGAGAATTCAAAACAGAATTGAAGGTAGTGTGTCCTATGGCTATCTCAATATTCTATTGA 1092 0.4066 MEDKIETADKKVLVDIVKLVQKRGLKGKLGGWKEFLDSHDRRFGANLSDPSKRSHEILAAFLKTFSEEEDLKFFDNIMRHHANQYTLERLKDKSLESPEQRLVQITLQHPLYPLDYSFPSIDEGWIVVNVKTKPKVMKSTKMLAVDCEMVLCEDGTEAVVRVCVVDHNLEVKLNEFVKPDKKIVDYRIDITGVSSQDLESVTCSLADVQKSMKKLLSNGTILVGHCLHNDLRVLKLDHVRVIDTAYIFQSLDGSTHRRPSLNGLCQAVLGSGVREKGATHNCLDDACATMNLVLAKIKHGVDKEFPISLVQEHVPVVPESEMAKLFLHKIPNTVNTEALHKIVPGEFKTELKVVCPMAISIFY* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01511 363 SUPERFAMILY Ribonuclease H-like 142 298 IPR012337 -
Lapu3g01511 363 Pfam Exonuclease 144 292 IPR013520 -
Lapu3g01511 363 CDD REX1_like 143 294 IPR034922 -
Lapu3g01511 363 Gene3D - 137 311 IPR036397 GO:0003676
Lapu3g01511 363 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 11 309 IPR047021 GO:0004527
Lapu3g01511 363 SMART exoiiiendus 141 302 IPR013520 -
Lapu3g01511 363 FunFam Small RNA degrading nuclease 3 137 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01511 Lapu-Chr3 17807903 17816873 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01511 138 308 C2H2 Transcription Factor Family AT3G27970 29.474 4.89e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01511 K14570 - gmx:100785565 579.711