Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01510 ATGGCTCTCGGCGACGATGCACAACACCACTCTCCCTCGATCCTCGATGCCCTTCTCTGCGAAGAGCGTGACACCTTTGAGGAAGATTTGGATGCGACCGACGGTGAGTGTGAGATCAACACCGATGACCCATCTGGGAGAAAGTTGCAATCTTTGCCTTTGGCTTTGCTTGAGAATGATCTGTTCTGGGAAGATGAAGAGCTCGTGTCTTTAATCTCCAAAGAGGGAGAGACCCATTTGTGTTCTCTTAGTGCCATTGCTGATGGGCCCTTAGAAGGGTCTCGCGTAGAGGCTGTGAACTGGATTTCAAAAGTCTGTGGACATTATGGGTTTTCTGCTTTGACCACTGTTCTTGCCGTCAACTACTTTGATCGGTTCATCTTAAGTTTGAGGTTTCATAGGGACAAGCCGTGGATGACACAGCTCACTGCTGTTGCTTGTTTGTCCCTTGCTGCAAAAACGGAAGAGACCCATGTGCCGCTTCTTTTGGACCTTCAAGTGGAGGAATCAAGGTTTGTGTTTGAGGCGAAGACTATTCAGAGAATGGAGCTGCTGGTGTTGTCAACTCTTAAATGGAGGATGCATCCGGTGACTCCAATTTCTTTCTTTGAACACATTGTCAGAAGGCTTGGTTTGAAGAGTCGCTTGCATTGGGAGTTTCTATGGCGTTGTGAGCGGGTTCTTCTCAATGTCACTGCGGATTCAAGGGCTATGAGTTATCTTCCTTCTACATTGGCTGCTGCTACCATGATCCATGTTATTAAAGAGATTGAATCGTTTAACGCCACAAAGTACATTGATCAGCTTCTCGGTTTACTAAAGATAAGCGAGGAACAAGTGAACCAGTGCTACAAGCTCATGCTGAAAATATTAGGTCGCTATGAAGGCATTTACAGCCTTCACCAGAAACGCAAGCGTCTATCTGAACCAAGCAGCCCAGGTGGTATCCTTGATTCAACTTTCAGTTGTGATAGCTCAAACGATTCGTGGGCATTGTCATCATCAGTCTCACTCTCACTGGAGCCGCTGTCTAAGAGGAGAAGAGCACAGGACCAGCAAATGCGATTGCCTTCTGTTAGTCGCGTGTCAATTGATGTTCTTAATAGCCCTCGTTAA 1116 0.4668 MALGDDAQHHSPSILDALLCEERDTFEEDLDATDGECEINTDDPSGRKLQSLPLALLENDLFWEDEELVSLISKEGETHLCSLSAIADGPLEGSRVEAVNWISKVCGHYGFSALTTVLAVNYFDRFILSLRFHRDKPWMTQLTAVACLSLAAKTEETHVPLLLDLQVEESRFVFEAKTIQRMELLVLSTLKWRMHPVTPISFFEHIVRRLGLKSRLHWEFLWRCERVLLNVTADSRAMSYLPSTLAAATMIHVIKEIESFNATKYIDQLLGLLKISEEQVNQCYKLMLKILGRYEGIYSLHQKRKRLSEPSSPGGILDSTFSCDSSNDSWALSSSVSLSLEPLSKRRRAQDQQMRLPSVSRVSIDVLNSPR* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01510 371 Pfam Cyclin, N-terminal domain 94 194 IPR006671 -
Lapu3g01510 371 Pfam Cyclin, C-terminal domain 197 294 IPR004367 -
Lapu3g01510 371 SMART cyclin_7 100 188 IPR013763 -
Lapu3g01510 371 FunFam CYCLIN D32 196 285 - -
Lapu3g01510 371 CDD CYCLIN_AtCycD-like_rpt1 95 192 - -
Lapu3g01510 371 Gene3D - 93 195 - -
Lapu3g01510 371 SMART Cyclin_C_2 197 310 IPR004367 -
Lapu3g01510 371 PANTHER CYCLINS 87 291 IPR039361 -
Lapu3g01510 371 FunFam D3-type cyclin 88 195 - -
Lapu3g01510 371 CDD CYCLIN_AtCycD-like_rpt2 197 287 - -
Lapu3g01510 371 Gene3D - 196 285 - -
Lapu3g01510 371 SUPERFAMILY Cyclin-like 63 195 IPR036915 -
Lapu3g01510 371 SUPERFAMILY Cyclin-like 198 297 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01510 Lapu-Chr3 17781147 17783246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01510 7 361 Core Cell Cycle Gene Families AT5G67260 51.515 2.29e-112 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01510 K14505 - gmx:100785030 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00534 2 4585090 4587104 Lapu3g01510 3 17781147 17783246 ECH
Lapu9g02127 9 35992030 35994893 Lapu3g01510 3 17781147 17783246 ECH
Lapu3g01510 3 17781147 17783246 Lapu3g01510 3 17781147 17783246 ECH
Lapu3g01510 3 17781147 17783246 Lapu2g00534 2 4585090 4587104 PCT