Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01506 ATGGAAACGCTTCCTTACTCGATCCCCCCTACCAAATTGCACTCCCTTCATATTTATACCCGTCCTACACGAATTCCATCCTCCAGGCTCCCTTTTCGCCCGCCCCGATTCTCAATCAAACCTTTATATCCCCCCAAATTTCTCATTCTCCATCGTCACAGCCATCGCTGCGTCGCTGAATCCTCCAATAATCACCACCACCACCACGACAGCGACCATAACGACCATCACGCTCATCACGACCATCACGACCATCAAGGTCACCACCACCACCACCACCACCACCACCACCATCACCACTCGCACGGCATCGATGGTGCCAATCTCACTGGGCCCCAAAAGGCGGTTATCGCGTTCGCCAAAGCCACCAGATGGATGGACCTGGCAGATATCCTGAGAGAGCACTTGCATTTATGCTGTTTCTCCACCGCTTTATTTGTGGCTGCTGCCATTTGCCCTCATACCTTGCCCAAGCCACTCGTCCGGCCTTTTCAAAACTCTCTCATTTTCGTTGCATTCCCTTTGGTTGGGGTTTCTGCATCACTTGATGCTCTTATTGAGATCAGTAGTGGAAAGGTGAATATCCATGTGTTAATGGCAATGGCAGCCTTTGCATCAATATTTATGGGAAACTCTTTGGAAGGAGGCTTGCTTCTTGCTATGTTTAATCTGGCGCATATAGCTGAAGAGTATTTCACCAGCCGATCGATGGTTGACGTCAGAGAGTTGAAAGAAAATAATCCAGATTTTGCCCTTGTTCTGGATACCAAGGATGATAAACTCCCCAATACATTTGACTTGGCATACAAGAGGATTCCCGTGCATGATGTCACTGTAGGATCATATATTCTGATTGGTGCCGGCGAGTCTGTGCCAGTAGATTGTGAAGTATTCCAAGGCAGTGCCACAATTACCATCGAGCACTTGACTGGGGAAGTGAAACCTTTGGAAGCCAAAGTTGGAGATAGAATTCCTGGCGGTGCAAGGAACTTAGATGGGAGGATAATTGTGAAGGTAACAAAAACTTGGAAGGAATCAACTCTCAACAAAATTGTTCAGTTGACTGAAGAAGCACAGTCAAATAAACCGAAACTTCAAAGGTGGCTGGATGAATTTGGTGAACGATATAGCCAAGTTGTTGTGGTGCTATCAATTGCAATTGCTGTTATTGGACCACTTCTATTTAAGTGGCCGTTCATTAGTACATCTGCTTGCAGAGGTTCAATTTACAGAGCGTTAGGGCTTATGGTGGCAGCATCACCTTGTGCCTTGGCTGTGGCCCCATTGGCATATGCTATAGCAATTAGTTCATGTGCCAAAAAGGGGATATTACTCAAAGGTGGGCATGTTCTTGATGCTCTAGCTTCTTGTAGTACTATTGCATTTGACAAAACAGGGACATTGACAACTGGTGGACTTGTATTCAAGGCAATTGAGCCCATTTATGGTCATCATGTTAGAAACAAAAAATCAAAATTTTCTTCCTGTTGCATTCCCACTTGTGAAAAAGAAGCTCTTGCAGTTGCTGCAGCTATGGAAAAGGGTACTACACACCCTATTGGAAGGGCTGTGGTTGACCATAGTGAAGGCAAAGACCTCCCATCTATTTCCGTTGAAAGTTTTGAATACTTTCCTGGTAGAGGCCTTACTGCTACTGTTAACAGCATTGAGTCAGGAACTGTAGGTGCCAAACTATTAAAAGCATCACTTGGGTCTATAGATTTCATCACTTCTTTTTGTCAATCTGAAGATGAGTCAGAAAAGATCAAGGAAGCGGTTAATACATCTTCTTATGGAAGTGAATATGTTCATGCTGCCCTTTCGGTTAATCAGAAGGTAACTTTGATTCATCTAGAGGATAGGCCTCGTCCTGGGGTTTTTAATGTTATTCAAGAATTGCAAGATGAAGCGAAGTTTCGTGTGATGATGTTAACTGGAGATCATGAGTCTAGTGCAAGGAGAGTTGCAAGTGCTGTGGGCATCAATGAGTTTCATTGCAATCTGAAGCCTGAAGATAAGCTGAGTCATGTGAAGGATGCCTCAAGAGATATGGGGGGAGGCTTAATTATGGTGGGTGAAGGCATCAATGATGCTCCAGCACTAGCTGCGGCAACTGTTGGGATAGTTCTTGCTCACCGTGCTAGTGCAACAGCCATAGCTGTTGCAGATGTATTGTTGCTCAGAGAAAATATTTCTGCAGTGCCATTTTGTATTGCCAAGTCTCGCCAGACAACTTCACTGATTAAACAAAATGTGGCTCTGGCATTGACGTCCATTGTTATGGCTTCCCTTCCATCAGTTTTGGGATTTTTGCCATTGTGGTTAACGGTTCTTTTACATGAAGGTGGAACCCTGCTTGTCTGTCTCAATTCCGTACGAGCTCTGAATGAGCCATCTTGGTCCTGGAAGCATGATATCTTACAATTGATTAGCCAGATTAAATCTAGATTTCTGTCTCTCAAGACGAATATCACGGACTCAAACAGTATCATACCAGCGAAATTGTAA 2508 0.445 METLPYSIPPTKLHSLHIYTRPTRIPSSRLPFRPPRFSIKPLYPPKFLILHRHSHRCVAESSNNHHHHHDSDHNDHHAHHDHHDHQGHHHHHHHHHHHHHSHGIDGANLTGPQKAVIAFAKATRWMDLADILREHLHLCCFSTALFVAAAICPHTLPKPLVRPFQNSLIFVAFPLVGVSASLDALIEISSGKVNIHVLMAMAAFASIFMGNSLEGGLLLAMFNLAHIAEEYFTSRSMVDVRELKENNPDFALVLDTKDDKLPNTFDLAYKRIPVHDVTVGSYILIGAGESVPVDCEVFQGSATITIEHLTGEVKPLEAKVGDRIPGGARNLDGRIIVKVTKTWKESTLNKIVQLTEEAQSNKPKLQRWLDEFGERYSQVVVVLSIAIAVIGPLLFKWPFISTSACRGSIYRALGLMVAASPCALAVAPLAYAIAISSCAKKGILLKGGHVLDALASCSTIAFDKTGTLTTGGLVFKAIEPIYGHHVRNKKSKFSSCCIPTCEKEALAVAAAMEKGTTHPIGRAVVDHSEGKDLPSISVESFEYFPGRGLTATVNSIESGTVGAKLLKASLGSIDFITSFCQSEDESEKIKEAVNTSSYGSEYVHAALSVNQKVTLIHLEDRPRPGVFNVIQELQDEAKFRVMMLTGDHESSARRVASAVGINEFHCNLKPEDKLSHVKDASRDMGGGLIMVGEGINDAPALAAATVGIVLAHRASATAIAVADVLLLRENISAVPFCIAKSRQTTSLIKQNVALALTSIVMASLPSVLGFLPLWLTVLLHEGGTLLVCLNSVRALNEPSWSWKHDILQLISQIKSRFLSLKTNITDSNSIIPAKL* 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01506 835 Gene3D - 472 622 IPR023299 GO:0000166
Lapu3g01506 835 MobiDBLite consensus disorder prediction 58 107 - -
Lapu3g01506 835 SFLD p-type atpase 443 744 IPR044492 -
Lapu3g01506 835 ProSitePatterns E1-E2 ATPases phosphorylation site. 463 469 IPR018303 -
Lapu3g01506 835 SUPERFAMILY HAD-like 459 791 IPR036412 -
Lapu3g01506 835 NCBIfam heavy metal translocating P-type ATPase 195 793 IPR027256 GO:0006812|GO:0016020|GO:0019829
Lapu3g01506 835 Gene3D - 233 359 - -
Lapu3g01506 835 NCBIfam HAD-IC family P-type ATPase 571 771 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu3g01506 835 NCBIfam HAD-IC family P-type ATPase 220 487 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu3g01506 835 MobiDBLite consensus disorder prediction 58 81 - -
Lapu3g01506 835 Pfam haloacid dehalogenase-like hydrolase 459 704 - -
Lapu3g01506 835 Gene3D - 454 742 IPR023214 -
Lapu3g01506 835 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 60 826 - -
Lapu3g01506 835 SUPERFAMILY Calcium ATPase, transmembrane domain M 197 776 IPR023298 -
Lapu3g01506 835 SFLD Haloacid Dehalogenase 443 744 - -
Lapu3g01506 835 Pfam E1-E2 ATPase 269 441 - -
Lapu3g01506 835 SUPERFAMILY Calcium ATPase, transduction domain A 269 354 IPR008250 -
Lapu3g01506 835 CDD P-type_ATPase_HM 139 793 - -
Lapu3g01506 835 PRINTS P-type cation-transporting ATPase superfamily signature 637 647 - -
Lapu3g01506 835 PRINTS P-type cation-transporting ATPase superfamily signature 715 727 - -
Lapu3g01506 835 PRINTS P-type cation-transporting ATPase superfamily signature 105 119 - -
Lapu3g01506 835 PRINTS P-type cation-transporting ATPase superfamily signature 691 710 - -
Lapu3g01506 835 PRINTS P-type cation-transporting ATPase superfamily signature 614 625 - -
Lapu3g01506 835 MobiDBLite consensus disorder prediction 82 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01506 Lapu-Chr3 17649397 17678418 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01506 95 816 Primary Pumps ATPases AT4G37270 75.485 0.0 1090
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01506 K01534 - gmx:100776309 1423.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01506 3 17649397 17678418 Lapu3g01506 3 17649397 17678418 ECH