LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu3g01501	ATGTTCTCAGCACTGCAGTTCCCCTCACTCGGTTACAACGTCCTAGATAATCTTTCCATGGAGATTCCTAAGCTCCATAGAATTGATCAACACTCTTTGTGTATACCACTTGTTTTCCTTCTTCAGCTCTCATCACTGCAGTTCCCCTCATTCGGTTACAACGTCCCAGATAAGTACTTCATCAATTGTGGGTCAGACAACAGTGTTACCGAAAGTGCCAAGGTTTACGTTGTTGAATCAAACCTTAAAACCAGTTTTATCAACAGTACCACAGCAGGGAATGAGTCATCGGTGCCTTCTCCTCTTTACCAAACAGCAAGGATTTTTCGAAGGGAATCTTGGTACAAGTTCAACATCGATTCAAATGGCACCTACCTGGTACGCCTCCATTTCTTCCCTTTCTCTTCCCCAAGTAATCTTTCCTCCGCCAGGTTCAACGTTTCAGTTCCTCGTTTCTGGTTGTTGCAAAATTTTACTGGTAGAAATGCTACCGATAACAACTCTGCTGTAGTAAAAGAGTTTTTCATAGAAATCAGTTCCCCCAGCTTCAAAATAACTTTCAGACCTCTGGAATCATCGTTTGCATTTGTGAATGCTATAGAACTGTTCGTACTACCCCTCCATCTTCTCTCCGACGAAGTGGCGCGTTTCGATACTATTGGAGGTACATCTCCCTACAGCGGAGGTTTGTACTCTCGGGTGTTGGAGACCAAGCATAGGCTTAATGTTGGAGGCCAAACTACCGAAGATATGTTATTGAGAAACTGGATTCCAGATGATATTTATCTCACTTATCCGGAAAACGCCAAGAATCGTTCCCCTTACAATGGTCAAATCGAGTACCATGTAGGTGATGACTCCGATGGTCCAAACGCAGCTAGTTATACAGCGCCAACTGAGGTGTACGGAACTGCTAAGGAGACTAATAACATCTCCAACATCTCTGCCACAGACTTTCAACTTTTAAACATAACGTGGGCTCTTCCGGTGGACAACAACGCAGATCATTTCCTTCGGCTTCACTTCTGTGACTATTGGAGTCAACAAGTTGGCCTTACATTCTTTGAACTTTCCATTTATGACGCCCTTGTTATACAGGTAAATACTGACGGAGTCGTGTCTAAGTTGTTGCCTGCACCTTTTTATTATGATTTTGTGGTGTCCTCAGATGACTCTGGACATATTAAGGTCAGCCTAGCACCTGATGCAACCGCTATCGTACCAAATGCATTTTTAAACGGGCTAGAAATAATGAAAGTGATTGAATCATCAAATTCTGTCCCCCTTGACTTGGACGAATCGAATTCCGAGCATAATCGTCTTCCTGTGTTGCTCGGTTCAATTCTCGGTGGCTTAGTCTTGGTTTTTGTTGTGGTGCTACTTGGCTTTCTTTGGTGGTTTAAAAGGAGGAAGGAAAAGCCCGTTGAGAATTCGGACTGGTTGCCAATTCCTGTTAATACTGGAAGGAGTTCTCACGGCGGATTGACTGATATAACAAGTCCCGGCTCTCCCCTTCCCGACATAAACCTTGGGCTCAAAATTTCCTTGATTGATCTTCGACTGGCCACAAAGAACTTCCACGCAAGTCAGCTGATTGGCAAGGGTGGCTTTGGCAACGTCTACAAGGGAGTTCTCAGGAATGGCGAAACAGTGGCTGTCAAAAGAAGCCAGCCAGGGTCAGGTCAAGGCCTTCCAGAATTTCAGAGAGAGATAATTGTTTTGTCTAAGATTCGCCACAGGAACCTTGTTTCCTTAATTGGGTATTGTGATGAAAGGTTGGAGATGATACTGGTTTATGAATACATGGAAAAAGGGACACTCAGGGACCATTTGTATAATTCAAAGTTGCCAAGCTTGTCCTGGAAGCAGAGGCTTGAAATTTGCATTGGAGTTGCTAGGGGTCTTCATTACCTTCACAGAGGAGCGGTTGGGGGAATCATTCACGGCGATGTAAAGTCCACAAACATATTGCTTGACGGGAACAATGTTGCTAAAGTGGCTGATTTTGGCCTTTCAAGGACAAGCTCTCTTGATCATCAACCAAATTTCAGCACTAGTGTTAAAGGCACTTTGGGGTATCTTGATCCTGAGTACTTGAGGACGCAAAAGGCGACAGAAAAATCAGATGTATATTCATTTGGGGTAGTTCTTTTGGAATTGTTATGTGCAAGACCGGTCCTTGATCCATCGCTTCCAACAGAGGAGATAAACTTGGTTGAATGGGGAATGCTTTGCAAACATAAGGGGATACTGAAAGGGATAATTGATCCTTCCATGAAGGACCAAATAGATGAAAACTCAGTGAGGAAATTTAGCGAGATAGTAGAAAAATGCTTGCAAGAAGTTGGTTCTGACAGGCCAACCATGGTTGAAGTGTTGTGGGACTTGGAGTATGCGCTTCAGCTTCAAAAAGGTGTTCATGGGGATAGTTCTTCTTCATCACTTCATTTACCTAATGTTCGGCCTCTTCCTCCATTTCTCTTACTCAGTGAAGCTGATGACTTGTCCCATGCGAGGAGTGACGAGTCTGATAATGTTGCGACTTCCTTTTCTCAGTTGAAAATTGACGACATCTCATTGAAATTTTAA	2589	0.4357	MFSALQFPSLGYNVLDNLSMEIPKLHRIDQHSLCIPLVFLLQLSSLQFPSFGYNVPDKYFINCGSDNSVTESAKVYVVESNLKTSFINSTTAGNESSVPSPLYQTARIFRRESWYKFNIDSNGTYLVRLHFFPFSSPSNLSSARFNVSVPRFWLLQNFTGRNATDNNSAVVKEFFIEISSPSFKITFRPLESSFAFVNAIELFVLPLHLLSDEVARFDTIGGTSPYSGGLYSRVLETKHRLNVGGQTTEDMLLRNWIPDDIYLTYPENAKNRSPYNGQIEYHVGDDSDGPNAASYTAPTEVYGTAKETNNISNISATDFQLLNITWALPVDNNADHFLRLHFCDYWSQQVGLTFFELSIYDALVIQVNTDGVVSKLLPAPFYYDFVVSSDDSGHIKVSLAPDATAIVPNAFLNGLEIMKVIESSNSVPLDLDESNSEHNRLPVLLGSILGGLVLVFVVVLLGFLWWFKRRKEKPVENSDWLPIPVNTGRSSHGGLTDITSPGSPLPDINLGLKISLIDLRLATKNFHASQLIGKGGFGNVYKGVLRNGETVAVKRSQPGSGQGLPEFQREIIVLSKIRHRNLVSLIGYCDERLEMILVYEYMEKGTLRDHLYNSKLPSLSWKQRLEICIGVARGLHYLHRGAVGGIIHGDVKSTNILLDGNNVAKVADFGLSRTSSLDHQPNFSTSVKGTLGYLDPEYLRTQKATEKSDVYSFGVVLLELLCARPVLDPSLPTEEINLVEWGMLCKHKGILKGIIDPSMKDQIDENSVRKFSEIVEKCLQEVGSDRPTMVEVLWDLEYALQLQKGVHGDSSSSSLHLPNVRPLPPFLLLSEADDLSHARSDESDNVATSFSQLKIDDISLKF*	863

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu3g01501	862	SUPERFAMILY	Protein kinase-like (PK-like)	514	794	IPR011009	-
	Lapu3g01501	862	ProSitePatterns	Protein kinases ATP-binding region signature.	532	554	IPR017441	GO:0005524
	Lapu3g01501	862	SMART	serkin_6	526	799	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu3g01501	862	Pfam	Protein kinase domain	526	793	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu3g01501	862	ProSiteProfiles	Protein kinase domain profile.	526	799	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lapu3g01501	862	Pfam	Malectin-like domain	61	420	IPR024788	-
	Lapu3g01501	862	Gene3D	Transferase(Phosphotransferase) domain 1	602	813	-	-
	Lapu3g01501	862	FunFam	Putative receptor-like protein kinase	233	421	-	-
	Lapu3g01501	862	Gene3D	Phosphorylase Kinase; domain 1	507	601	-	-
	Lapu3g01501	862	FunFam	receptor-like protein kinase FERONIA	500	601	-	-
	Lapu3g01501	862	FunFam	Putative receptor-like protein kinase	58	206	-	-
	Lapu3g01501	862	FunFam	Receptor-like protein kinase FERONIA	602	816	-	-
	Lapu3g01501	862	Gene3D	-	58	204	-	-
	Lapu3g01501	862	Gene3D	-	235	421	-	-
	Lapu3g01501	862	PANTHER	OS07G0166700 PROTEIN	513	803	IPR045272	GO:0004714\|GO:0006468
	Lapu3g01501	862	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	646	658	IPR008271	GO:0004672\|GO:0006468
	Lapu3g01501	862	CDD	STKc_IRAK	532	797	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu3g01501	Lapu-Chr3	17575459	17578290	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu3g01501	29	857	Receptor kinase-like Gene Family	AT2G23200	43.706	0.0	595

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Lapu3g01501		Malectin_like	1.2e-23	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu3g01501	-		-	gmx:100789555	1070.07