Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01496 ATGACCTTCCTCGGGGAGGATGAAGTTGATGATCATGAGCATGTGTCAATCAATGACAATCATGCCAACTGTGAAATTGTGACTCCTGAAGGTGATAACTTAGGAGAATGGCTGAGTTTGGGCCTCAAAGGAGACATGCCAGTGGAGGCAGCAGAACAGCAAAACTCATCAAAGCCTCACCACAACAAGGTATTCTCATGCAACTTCTGCATGAGAAAGTTTTACAGCTCACAAGCCTTAGGGGGTCACCAGAATGCACACAAGAGGGAAAGAGAAGCTGCTAGAAGCTACCAGTCTCATAGGATGATGACAACTAGATCACCAATGGGGTTTGCTTACACTTCTCTGGCATCTAGGTCACTGGGAATACAGCCTCACTCCCTTGTGCACAAACCAGGCAGAGAAAGGTCTGCTATGGTGGCTAGATTCAGTGATGCCAACAGTAATAATGGGGCTGGAGTGGCATCATGGACACCCTTTATGCTAGAACAGGCTGTGGATTTCTATTGGCCAGGTAGCTTTCGGATGGACATGCCAAAGCAAGAATCAGATGTTAATAAGATTGACTTAGATCTTCGGCTCTGA 585 0.465 MTFLGEDEVDDHEHVSINDNHANCEIVTPEGDNLGEWLSLGLKGDMPVEAAEQQNSSKPHHNKVFSCNFCMRKFYSSQALGGHQNAHKREREAARSYQSHRMMTTRSPMGFAYTSLASRSLGIQPHSLVHKPGRERSAMVARFSDANSNNGAGVASWTPFMLEQAVDFYWPGSFRMDMPKQESDVNKIDLDLRL* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01496 194 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 92 IPR013087 -
Lapu3g01496 194 SUPERFAMILY beta-beta-alpha zinc fingers 61 92 IPR036236 -
Lapu3g01496 194 Gene3D Classic Zinc Finger 43 115 - -
Lapu3g01496 194 PANTHER ZINC FINGER PROTEIN 4-LIKE 15 194 - -
Lapu3g01496 194 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01496 Lapu-Chr3 17490733 17491673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01496 22 185 C2H2 Transcription Factor Family AT1G24625 35.714 2.11e-22 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01496 - - ccaj:109809498 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01496 3 17490733 17491673 Lapu3g01496 3 17490733 17491673 ECH