Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01494 ATGTCTGGGAACCCGCAAGAGCAGCCACTGTTACTGGACTCCTTTCAGGAAGAAGAGGAGCCGCAAGAAGCAGCCTACGAATCCTCGGAGAAGATCGTGGTGGTGGGAATCGACGAGTCCGATAGCGAGGACAATTGGGGGAGAGTGCCTCCTTTCTCCTGGAAGAAGCTATGGCTCTTTACTGGGCCCGGCTTTCTCATGAGCATAGCGTTTCTGGACCCGGGCAACCTCGAGGGGGACCTTCAGGCCGGTGCCATTGCCGGCTACTCCCTGCTGTGGCTTCTGATGTGGGCCACGGCCATGGGCCTCTTGATCCAGCTCCTCTCCGCCCGCCTCGGCGTCGCCACCGGGAAGCACCTCGCCGAACTCTGCAGGGAGGAGTACCCTGCGTGGGCTCGGATAGTGCTTTGGATCATGGCTGAACTCGCTCTCATTGGCTCCGATATTCAGGAGGTTATTGGAAGCGCTATTGCTATCAGAATTCTCAGTCGTGGGGTTGTGCCCCTTTGGGCTGGGGTCGTCATCACTGCTCTTGACTGTTTTATCTTTCTCTTTCTAGAGAACTATGGTGTGAGGACATTGGAAGCTTTTTTTGCTGTTCTCATTGGTGTGATGGCAATCTCGTTCGCGTGGATGTTTGGTGAAGCAAAGCCCAGTGGCAAGGAACTGCTTCTTGGCGTTTTGATTCCAAAACTCAGCTCCAGAACTATACAACAGGCTGTTGGAGTTGTGGGGTGCCTTATTATGCCTCACAATGTTTTCTTGCACTCTGCTCTTGTTCAGTCAAGGCAGGTTGACCGCAGCAAGAAAGGCCGGGTTCAAGAAGCTCTTAATTATTACTCTATAGAGTCCACCCTTGCCCTTGTAGTCTCCTTTATCATAAATATATTTGTCACAACAGTGTTTGCTAAGGGGTTTTATGGTTCTGAACTTGCAAACAGCATTGGTCTTGTAAATGCAGGACAGTATCTTGAGGAGACATATGGGGGTGGACTGTTTCCAATTTTATATATATGGGGTATTGGGTTATTAGCAGCAGGTCAAAGTAGCACTATTACTGGCACTTATGCTGGACAATTCATCATGGGAGGTTTTCTAAATTTAAGATTAAAGAAGTGGATGAGGGCGTTGATTACCCGAAGTTGTGCAATAATCCCGACCATGATAGTTGCTCTTATATTTGATACCTCAGAGGAATCGTTAGATGTTCTGAATGAGTGGCTCAATGTTCTTCAATCAGTTCAAATCCCCTTTGCACTTATTCCCTTGCTTTGTCTGGTGTCAAAGGAGCAGATAATGGGCACTTTCAGAATTGGAACTGTTCTCAAGATCACGTCATGGCTTGTGGCTGCTCTGGTGATAGTGATTAATGGCTATCTTTTGACGGAATTCTTTTCCTCCGAAGTTAATGGTCCTTTGTTTGGCTCTGTAGTGGGTGTAATAACTGCTGCATATGTTGCATTCGTATTATACCTTATCTGGAGGGCCATTACCTTTTTACCTTGGCAAAGGGTAACACGACCAAAGACAATTGCTCATTTAGATAGTTAG 1551 0.4765 MSGNPQEQPLLLDSFQEEEEPQEAAYESSEKIVVVGIDESDSEDNWGRVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGKHLAELCREEYPAWARIVLWIMAELALIGSDIQEVIGSAIAIRILSRGVVPLWAGVVITALDCFIFLFLENYGVRTLEAFFAVLIGVMAISFAWMFGEAKPSGKELLLGVLIPKLSSRTIQQAVGVVGCLIMPHNVFLHSALVQSRQVDRSKKGRVQEALNYYSIESTLALVVSFIINIFVTTVFAKGFYGSELANSIGLVNAGQYLEETYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRALITRSCAIIPTMIVALIFDTSEESLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGTFRIGTVLKITSWLVAALVIVINGYLLTEFFSSEVNGPLFGSVVGVITAAYVAFVLYLIWRAITFLPWQRVTRPKTIAHLDS* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01494 516 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 55 433 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu3g01494 516 Pfam Natural resistance-associated macrophage protein 78 439 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu3g01494 516 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 43 495 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu3g01494 516 Hamap Divalent metal cation transporter MntH [mntH]. 43 465 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu3g01494 516 MobiDBLite consensus disorder prediction 1 25 - -
Lapu3g01494 516 NCBIfam Nramp family divalent metal transporter 62 431 - -
Lapu3g01494 516 PRINTS Natural resistance-associated macrophage protein signature 191 212 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu3g01494 516 PRINTS Natural resistance-associated macrophage protein signature 240 263 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu3g01494 516 PRINTS Natural resistance-associated macrophage protein signature 136 162 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu3g01494 516 PRINTS Natural resistance-associated macrophage protein signature 347 366 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu3g01494 516 PRINTS Natural resistance-associated macrophage protein signature 375 392 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu3g01494 516 PRINTS Natural resistance-associated macrophage protein signature 166 185 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lapu3g01494 516 PRINTS Natural resistance-associated macrophage protein signature 409 428 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01494 Lapu-Chr3 17436762 17441376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01494 31 502 Inorganic Solute Cotransporters AT2G23150 79.368 0.0 781
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01494 K21398 - gmx:547711 958.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01494 3 17436762 17441376 Lapu3g01494 3 17436762 17441376 ECH
Lapu2g00525 2 4476263 4479785 Lapu3g01494 3 17436762 17441376 PCT