Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01476 ATGACAAAATCCCAACTCCCATATACAAACAATTTGCTGGCCGGCTGCTTCACATGCCTCCAAAATCCAACACGAGCAGTGCTCCTACGGCTACAGCAATTTTCACCCACAACTTGGATCGCTTCCCAATGGCAAAGGTACCCACTACTAGTCAGGACTAGGCCCTGGCCTGCAGGCTTTCCTACCTCCAAGGCCTTAACCAACTTCGGCGACGCTAACTGCATGGAACAGTTGCTTGTTCACTGTGCCAACGCTATTCAAACCAACGACGTAACCCTTGCACAGCAAATCCTTTGGGTCCTCAACAACATAGCATCTCCTGATGGCGACTCCAACCAACGCCTTGCCTCCAGCTTCCTCCGTGCCCTCACTGCACGAGCTGCTCAAACGGGCACCTGCAAGATGCTTGCTGCCGTAGCCGATCATGCCCGCACCAACCTCTCCATAGACACCCACAAATTCTCCGTCATCGAGCTCGCCAACTTCGTCGACCTAACCCCTTGGCACCGCTTCGGCTTCACTGCCGCCAACGCTGCAGTCCTAGAAGCCACCGATGGTTTCTCCATCATCCACATAGTTGACCTAAGCCTCACGCATTGCATGCAGATTCCCACGCTCATCGATGCTATCGCCAGCCGCCATGAGGTTCCTCCTCTCATCAAACTCACTGTCGCGGATGCCACCTGCAGAGACATCCCTCCTATGCTCGACCTCTCCTATGATGAACTCGGGGCCAAGTTGGTCAATTTCGCAAGGTCCAGAAACGTGGTCATGGAATTCAGAGTGGTTTCTTCAACTTACCAAGATGGATTCGTGGGTTTGATCGAACAGTTAAGAGTGCAACAACAACATTTTATTTACGCAGCAGAACCTCGTCCCACTGAAGCTTTGGTTATCAACTGTCACATGATGCTTCACTATATCCCTGACGAAACCCTACACGCAGTTCCTGAGACCGACTTAACCTCTTTGCTTTACGATTCTTCTGCTGCTTCTTCTGCTGCTAGTGTTACTTCCACTTCCTCGCTACGATCATTGTTCCTCAAATCCCTGCGGGGTTTGGATCCAACTGTTGTAATCTTGGTGGATGAAGATGCAGATTTGACATCCAATAACTTGGTTTGCAGGCTAAGATCTGCCTTTAACTATCTATGGATACCTTACGACACTGTGGACACGTTCCTTCCACGAGGGAGCAACCAAAGGCTGTGGTACGAAGCAGACATTTGCTGGAAGATTGAGAACGTGATAGCACATGAAGGGGTTCAGAGGGTGGAGAGGGTTGAGCCTAAGAACAGGTGGGAGCAGCGAATGAAGAACGCGAACTTTCAAGGGGTGGCTTTCAGTGAGGACTCTGTTGCGGAGGTGAAGGGCATGCTGGATGAACATGCTGCGGGGTGGGGATTGAAGAGGGAAGATGAACACATTGTGCTCACTTGGAAAGGACACAACGTGGTCTTTGCCTCTGCTTGGTTACCTGCTTGA 1485 0.5098 MTKSQLPYTNNLLAGCFTCLQNPTRAVLLRLQQFSPTTWIASQWQRYPLLVRTRPWPAGFPTSKALTNFGDANCMEQLLVHCANAIQTNDVTLAQQILWVLNNIASPDGDSNQRLASSFLRALTARAAQTGTCKMLAAVADHARTNLSIDTHKFSVIELANFVDLTPWHRFGFTAANAAVLEATDGFSIIHIVDLSLTHCMQIPTLIDAIASRHEVPPLIKLTVADATCRDIPPMLDLSYDELGAKLVNFARSRNVVMEFRVVSSTYQDGFVGLIEQLRVQQQHFIYAAEPRPTEALVINCHMMLHYIPDETLHAVPETDLTSLLYDSSAASSAASVTSTSSLRSLFLKSLRGLDPTVVILVDEDADLTSNNLVCRLRSAFNYLWIPYDTVDTFLPRGSNQRLWYEADICWKIENVIAHEGVQRVERVEPKNRWEQRMKNANFQGVAFSEDSVAEVKGMLDEHAAGWGLKREDEHIVLTWKGHNVVFASAWLPA* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01476 494 ProSiteProfiles GRAS family profile. 66 492 IPR005202 -
Lapu3g01476 494 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Lapu3g01476 494 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 74 481 IPR005202 -
Lapu3g01476 494 Pfam GRAS domain family 75 491 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01476 Lapu-Chr3 17161051 17163401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01476 57 493 GRAS Transcription Factor Family AT3G49950 57.370 2.03e-175 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lapu3g01476 GRAS 4.8e-90 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01476 - - gmx:100814364 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01476 3 17161051 17163401 Lapu3g01476 3 17161051 17163401 ECH