Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01473 ATGGCCCTAAGGCCCTTCCATTACAACTTCTCGCGCGATAGATTGCTCCTTCTCATCCGCTCTTCTCTTCCCCATTCCTTTCCCTCTCCTCCTCTCCGCTCTCCCAACTTCTCCCTAACTTTTCCATCCGCTTTCTCCTTCCGCCACTTCGCCGCCGCCTCTCTCACGCGCTCTCCGCCGCCGCAGCTCCTCGACGCCATGGCGCAGAAATTCGGAAAGTCCACGCGCCGCCCCGGCGCCTCTTCCAAGGCCAGGGTTTACGCGGATGTCAACGTTGTTCGCCCTAAGGAATATTGGGACTACGAGTCCCTCAACGTCCAGTGGGGGGAGCAAGATGATTACGAGGTGGTGAGGAAGGTCGGTAGGGGGAAATACAGTGAGGTGTTCGAAGGCGTTCACTGCACGGATGGTGAGAAATGTATCATTAAGATCCTGAAACCCGTGAAGAAGAAGAAGATCAAGAGGGAAATCAAAATATTACAGAATCTCTGTGGAGGGCCTAATATAGTAAAGTTGCTTGACATTGTCAGAGACCAGCAGTCAAAGACCCCTAGTCTTATATTTGAATATGTCAATAACACTGATTTTAAAGTGCTCTATCCAACATTGTCAGACTATGATATTCGATATTACATTTATGAACTTCTGAAGGCACTGGATTATTGCCACTCACAAGGAATCATGCATCGGGATGTGAAACCACATAATGTAATGATTGATCATGAGCAGCGTAAGCTTCGCCTTATAGATTGGGGGCTTGCAGAATTCTATCATCCTGGAAAAGAGTATAATGTTCGTGTGGCTTCAAGATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCTCTAGATTTGTGGAGTCTTGGTTGTATGTTTGCTGGGATGATATTTCGTAAGGAGCCATTCTTTTATGGACATGATAACTATGATCAACTTGTCAAAATAGCTAAGGTACTTGGGACAGATGAATTAAGTGCATATTTGGATAAGTATAGAATAGAGTTGGACCCACATCTTGCAGCACTTATTGGGAGGCATAGCCGTAAGCCTTGGGCAAAGTTCATTAATGTAGACAATCATCACTTGGCTGTTCCTGAGGCTGTTGACTTTGTTGACAAGTTATTACGTTATGATCACCAAGATCGTCCCACTGCAAAAGAAGCCATGCCCGAACCTGGACTTGCATCTGGGACTTCAGGATTATGA 1221 0.4578 MALRPFHYNFSRDRLLLLIRSSLPHSFPSPPLRSPNFSLTFPSAFSFRHFAAASLTRSPPPQLLDAMAQKFGKSTRRPGASSKARVYADVNVVRPKEYWDYESLNVQWGEQDDYEVVRKVGRGKYSEVFEGVHCTDGEKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKVLGTDELSAYLDKYRIELDPHLAALIGRHSRKPWAKFINVDNHHLAVPEAVDFVDKLLRYDHQDRPTAKEAMPEPGLASGTSGL* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01473 406 FunFam Casein kinase II subunit alpha 100 190 - -
Lapu3g01473 406 PANTHER CASEIN KINASE II SUBUNIT ALPHA 78 396 IPR045216 GO:0004674|GO:0006468
Lapu3g01473 406 ProSitePatterns Protein kinases ATP-binding region signature. 120 143 IPR017441 GO:0005524
Lapu3g01473 406 Gene3D Phosphorylase Kinase; domain 1 114 190 - -
Lapu3g01473 406 SMART serkin_6 114 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01473 406 ProSiteProfiles Protein kinase domain profile. 114 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01473 406 CDD STKc_CK2_alpha 95 397 IPR045216 GO:0004674|GO:0006468
Lapu3g01473 406 MobiDBLite consensus disorder prediction 387 406 - -
Lapu3g01473 406 Gene3D Transferase(Phosphotransferase) domain 1 191 397 - -
Lapu3g01473 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Lapu3g01473 406 SUPERFAMILY Protein kinase-like (PK-like) 86 397 IPR011009 -
Lapu3g01473 406 Pfam Protein kinase domain 114 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu3g01473 406 FunFam Casein kinase II subunit alpha 191 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01473 Lapu-Chr3 17048543 17057989 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01473 112 394 Core Cell Cycle Gene Families AT3G48750 32.095 5.88e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Lapu3g01473 Pkinase 1.3e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01473 K03097 - gmx:100776388 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01473 3 17048543 17057989 Lapu3g01473 3 17048543 17057989 ECH