Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01472 ATGATGGGAGAAGAGTTAGCGTTTGCTTCTTCTCCAACCATGGTGGTTGTGACTGTGAGAGAGTTCGACCCAAATAAAGACAGGGAGGGAGTGGAAGCCGTTGAAAGAATATGCGAGGTTGGACCCAGTGGGAAGCTTTCACTCTTCACCGACCTCCACGGTGACCCTATTTGCAGGGTAGCCGAAATTGGGCAAGAGACAGTGGGAATGATAAGGGGTTGCATCAAAACCGTTACATGCGGAAAGAAGCTCCAGAGGCATGGAAAGAACAGCACCGACCCTGGTTCCAAACAAGTCCCTATCTACACAAAACTGGCCTACATATTAGGTCTCCGGGTTTCTCCACACCACAGGAGAATGGGAATAGGGTTGAAGCTGGTGCAGAGAGTGGAGGAGTGGTTCAGAGAGAATGGAGCGGAGTACGCTTACATGGCAACAGAAAAGGACAACGTGGCATCCGTTAAGCTCTTCACCGACAAATGCGGCTACTCAAAGTTTCGTACCCCGTGCATCCTCGTCAACCCCGTTTTTGCTCACCCACTCAGAACCTCTTCCAAAGTCACTATCATACAACTTGCCCCTAATGACGCCGAGTTGCTCTACCGCACCAAGTTCGCCACCACCGAGTTCTTCCCGCGCGACGTCGACTCCGTCCTCAACAACAACCTCACTCTCGGCACCTTCCTCGCCGTTCCGCGCGGCTCTTACTCCCCCTACACGTGGCTAGGTTCGCCCCACTTTCTCGCGGACCCACCCTCCTCCTGGGCCCTCCTCAGCGTGTGGAACTGCAAGGACGTGTTCACGCTCCAGGTGAGGGGCGCGTCGCGCGTGAAGAAGGCGCTCGCCAAGACCACTCGCCTCATGGACCGCGCCTTCCCCTGGCTGCGGCTGCCCTCCATCCCCAACTTCTTCCAGCCGTTTGGATTTCACTTTTTGTACGGGCTCGGAGGGGAGGGCCCACAGGCCCAAAAGATGGTGAGGGCTTTGTGCGCCTTCGCTCATAACCTGGCCAAGGATCGTGGCTGCCAGGTGGTGGCCACCGAGGTTTCAAGCCAGGAACCCCTACGCTGCGCCATCCCGCACTGGAAGATGCTATCTTGCGAAGAGGATTTGTGGTGCATGAAGAGACTCGGGGAAGATTACAGCGATGGTTCTGTTGGTGATTGGACCAAATCCCCACCAGGATTCTCAATTTTTGTTGATCCCAGAGAGTTCTAA 1218 0.5525 MMGEELAFASSPTMVVVTVREFDPNKDREGVEAVERICEVGPSGKLSLFTDLHGDPICRVAEIGQETVGMIRGCIKTVTCGKKLQRHGKNSTDPGSKQVPIYTKLAYILGLRVSPHHRRMGIGLKLVQRVEEWFRENGAEYAYMATEKDNVASVKLFTDKCGYSKFRTPCILVNPVFAHPLRTSSKVTIIQLAPNDAELLYRTKFATTEFFPRDVDSVLNNNLTLGTFLAVPRGSYSPYTWLGSPHFLADPPSSWALLSVWNCKDVFTLQVRGASRVKKALAKTTRLMDRAFPWLRLPSIPNFFQPFGFHFLYGLGGEGPQAQKMVRALCAFAHNLAKDRGCQVVATEVSSQEPLRCAIPHWKMLSCEEDLWCMKRLGEDYSDGSVGDWTKSPPGFSIFVDPREF* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01472 405 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 17 182 IPR000182 GO:0016747
Lapu3g01472 405 Pfam Acetyltransferase (GNAT) family 53 163 IPR000182 GO:0016747
Lapu3g01472 405 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 16 405 - -
Lapu3g01472 405 CDD NAT_SF 60 143 - -
Lapu3g01472 405 Gene3D - 15 170 - -
Lapu3g01472 405 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 14 164 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01472 Lapu-Chr3 17024138 17025724 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Lapu3g01472 Acetyltransf_1 1.2e-16 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01472 - - gmx:100775317 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01472 3 17024138 17025724 Lapu3g01472 3 17024138 17025724 ECH
Lapu2g00501 2 4254019 4255695 Lapu3g01472 3 17024138 17025724 PCT