Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01461 ATGGGTGCTCCTAAGCAGAAATGGACTGCTGAAGAAGAAGCTGCGTTGAAAGCTGGAGTAGTCAAACATGGGGCAGGAAAATGGCGCACCATACTTACAGATCCTGAATTTCGTGCTATTTTGCTCATGCGTTCAAATGTAGATCTTAAGGATAAATGGAGGAATATAAATGTCACAGCAATATGGGGATCCCGGCAGAAGGCAAAACTTGCTCTTAAGAGGAACCTACCTGCCCCCAAAATTGACAATAACCATATGGCCTTGAGCACTGTAGTTCGACATGATGAAGTTCTTGATTCTAAGCCTTTAGCGGTTTCTGGTGGACCATTGCAATCTCCTAATTTGAAAGAACAAATATCAAGGTTGGTCGATAATCACGTGATGGAGGCCATTGTCAACCTGAAGGAGCAAAAGGGTTCTGACAAGGGTGCCATTATTTCTTACATAGAGGAAAAATATCGGTCTCCACCAAATATCAGTAAACTACTGTCAACCAAACTGAAGCATATGGTAGCAAGTGGCAAAATAATCAAGGAAAAGCTTAAGTACAGGATTGCATCAAGTTCAGCGGTCTCTGAGAAAAGAAGATGTTCATTATTGGAAGGGAGGTCCAAAGATCCTTCAGAATCAAATAAGAATGATGATGTGAACATCCTTTCTAAATCCCAAATTGATGAAGAGATGTCAAAAGTGAAGGGCTTGACTGCTCAAGAGGCAGCTGCCGCAGCTGCAAAAGCAGTTGCAGAGGCTGAGGTTGCCATTGCACAGGCTGAGGTAGCAGCTAGGCAGGCAGAGGCTGCGGAAGCTGAAGCTGAGGCTGCTCAAGTGTTTGCAAAAGCAGCAATGAAGGCTCTAAAATGCAAAATGCTTCATATTTGGTTACTTAATTAG 891 0.4321 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFRAILLMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPAPKIDNNHMALSTVVRHDEVLDSKPLAVSGGPLQSPNLKEQISRLVDNHVMEAIVNLKEQKGSDKGAIISYIEEKYRSPPNISKLLSTKLKHMVASGKIIKEKLKYRIASSSAVSEKRRCSLLEGRSKDPSESNKNDDVNILSKSQIDEEMSKVKGLTAQEAAAAAAKAVAEAEVAIAQAEVAARQAEAAEAEAEAAQVFAKAAMKALKCKMLHIWLLN* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01461 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Lapu3g01461 296 SMART h15plus2 104 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu3g01461 296 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Lapu3g01461 296 SMART sant 4 59 IPR001005 -
Lapu3g01461 296 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu3g01461 296 Pfam linker histone H1 and H5 family 127 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu3g01461 296 CDD SANT_TRF 6 57 - -
Lapu3g01461 296 PANTHER SINGLE MYB HISTONE 4 1 288 IPR044597 GO:0003691
Lapu3g01461 296 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Lapu3g01461 296 FunFam Telomere repeat-binding factor 1 2 58 - -
Lapu3g01461 296 Coils Coil 247 274 - -
Lapu3g01461 296 Gene3D - 2 59 - -
Lapu3g01461 296 Gene3D - 112 196 IPR036388 -
Lapu3g01461 296 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lapu3g01461 296 SUPERFAMILY "Winged helix" DNA-binding domain 124 196 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01461 Lapu-Chr3 16840921 16846565 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01461 1 293 Single Myb Histone (SMH) Gene Family AT5G67580 54.485 2.95e-75 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu3g01461 Linker_histone 1.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01461 K09422 - gmx:100779583 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu2g00485 2 4121366 4126556 Lapu3g01461 3 16840921 16846565 PCT