Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01457 ATGATGTCAGCTCATACATTCTTAATCACCATGTCTCTCGAGTCCACAAGCCACCAAACTCCTGACTTGTATTGCAGTGAAGTAACCAGCGAAGTGATTCACTTGGAGGATTCTGATGAGGCTTTGAAGTTCAATTATGTACTATGGGGAGATTCCGATAGTGATGAAAGTTGTATATTGAGCCTATTAGAATCCGAACATGACCAAGTACAGGAACAAACAAAGTCACCAGGACAACTTCGCAAAACAACATGGCTGGTTAATGCTCGAGAAGAGGCCATAAATTGGATCCTAAAGGTGCATGCTTACTACAGTTTTAGACCTGAGACAGCTTATCTTTCTGTAAATTACCTCGATCGTTTCCTCTTGTCACACACCTTGAAGCATGATAAAGCATGGCCTCTGCAGCTGTTATCAGTTGCTTGTCTTTCAGTAGCAGCAAAAATGGAAGAAACAAAAGTGCCACTTCTTTTGGACCTACAAGTGATCGAGTCTAGATTCCTCTTTAAGCCCAAAACAGTTCAAAGGATGGAACTTTTGGTTATGGCCAGTCTGAAGTGGCGATTGCGCATTGTAACCCCTTTTGATTTTGTGCATCTTTTCATTGCAAAGCTTTCATGGTCTGCTTCCACGTGGGGGGATTTAAGTTACACTGTTTCTTGTGTCTCAGATGTTATTATCAGAACATGTCTAGTCATGGATTTCTTGGTGTTTTCACCATCCACAATAGCAGCAGCGGCTCTGTTATGGGTAACCAATCAATGTGTAGAAGACAAGAAATCAGATTGCTTCCACAAGAATATAAACATTGAGATGGTGCAGAAATGTTACAAACTAATGAAGCAGAAACAGATCATTCGCCGATCAGAACTTTATTGGGCAAGGAGTTTGCAATTGTTGCCCCGAAGTCCCACCTGTGTGCTTGATCGTGCAGCTATGCAAGAAAGCTGCGATGCTTACAAGCCCTGA 969 0.4211 MMSAHTFLITMSLESTSHQTPDLYCSEVTSEVIHLEDSDEALKFNYVLWGDSDSDESCILSLLESEHDQVQEQTKSPGQLRKTTWLVNAREEAINWILKVHAYYSFRPETAYLSVNYLDRFLLSHTLKHDKAWPLQLLSVACLSVAAKMEETKVPLLLDLQVIESRFLFKPKTVQRMELLVMASLKWRLRIVTPFDFVHLFIAKLSWSASTWGDLSYTVSCVSDVIIRTCLVMDFLVFSPSTIAAAALLWVTNQCVEDKKSDCFHKNINIEMVQKCYKLMKQKQIIRRSELYWARSLQLLPRSPTCVLDRAAMQESCDAYKP* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01457 322 CDD CYCLIN_AtCycD-like_rpt1 89 187 - -
Lapu3g01457 322 CDD CYCLIN_AtCycD-like_rpt2 192 280 - -
Lapu3g01457 322 SMART Cyclin_C_2 192 317 IPR004367 -
Lapu3g01457 322 SMART cyclin_7 95 183 IPR013763 -
Lapu3g01457 322 Gene3D - 191 277 - -
Lapu3g01457 322 Gene3D - 81 190 - -
Lapu3g01457 322 FunFam D6-type cyclin 73 187 - -
Lapu3g01457 322 Pfam Cyclin, C-terminal domain 192 284 IPR004367 -
Lapu3g01457 322 Pfam Cyclin, N-terminal domain 62 189 IPR006671 -
Lapu3g01457 322 SUPERFAMILY Cyclin-like 56 189 IPR036915 -
Lapu3g01457 322 SUPERFAMILY Cyclin-like 174 289 IPR036915 -
Lapu3g01457 322 FunFam D6-type cyclin 188 278 - -
Lapu3g01457 322 PANTHER CYCLINS 61 284 IPR039361 -
Lapu3g01457 322 ProSitePatterns Cyclins signature. 90 121 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01457 Lapu-Chr3 16784537 16786726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01457 87 285 Core Cell Cycle Gene Families AT1G70210 46.117 3.16e-55 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01457 K18810 - gmx:100799323 506.523