Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01455 ATGGCAATGTTTCAGCCTTCTTGTAAGAGGGATGGGATCGAGGGCCAGATTCTAGATCTGGACACGGCGGTGAAAGATGGGGTTTTGGGCGGCGTGGATTCTGGGGTTGTGGGGACTGGGGTTGGTGAAAAACTGGATCTTGGGAAGATGATTGAAGAGTTGGACTTGTGTGAAGTTCCCTCTGTGTTCATTTGCCCAATTTCGCTTGAGCCAATGCAGGACCCTGTGACTCTCTGCACGGGCCAGACCTACGAGAGGTCCAACATTCTCAAATGGTTCAGTTTGGGACACTTCACTTGCCCCACCACAATGCAAGAGCTCTGGGACGATTCCATCACTCCAAACACTACCCTCTACCGTTTGATATCCACTTGGTTTTCTCAGAAGTATCTTGTGATGAAGAAGAGATCAGAAGACGTCCATGGGAGGGTGTTGGAACTTGTTGAGACTCTCAAGAAGGTGAAGGGTCAAGCTCGTGTTCTTGCTCTCAAGGAGCTCCATCAAGTGGTGGCTGCTCATGCCACTGCCCGCAAGGCATTGGTCGATGGTGATGGAGTCTCCGTTGTGTCGTCGTTGCTCGGTCCTTTCACTTCCCATGCGGTTGGTTCCGAGGTCATTGGTGTTCTTGTGAGTTTGAATCTTGATTGTGAGTCCAAGAGGAATCTACTGCAGCCTGCGAGGGTTTCCTTGATGGTGGACATTTTGAATGAGGGTTCTATTGAGACAAAGATCAATTGCACGCGGCTGATTGAGACACTGATTGAAGGGAAGGATTTCCACTTGGAGGTTTTCAGGAGCCATAGTCTTTTGGTTGGGTTGATGAGGCTCGTAAAAGATAAGAGGCACACAAACGGAATCTGCCCTGGACTGAAACTCCTCAGAACAGTGTGCTTGCATTCAGAAGTTAAGAGTTTGCTGGTAAGCATTGGAGCTGTTTCTCAATTGGTTGAGTTGTTGTCTGGTTTGGAGTCCGAATGTTTGGAATTGGCTCTTTCTATCTTGGATGCACTGGCTTCTGTTCCTGAAGGCAGATTAGCTTTGAAGGATTGTTCGAATACGATACACGTTATGGTGAAACTGTTGATGCGGGTATCAGAAAACTGCACTCAGTATGCATTGTCAATACTGTGGTCTGTGTGCAAGCTGGCACCTGAGGAGTGCTCTTTGATTGCTGTGGAAGCAGGACTTGCTGCGAAACTTCTCCTTGTGATCCAAAGCGGTTGCAATCCTATATTGAAACAACAGTCGGCTGAACTTTTGAAGTTGTGTAGGCAAGAGAGGCAAAGACCAGCTACTTCCCAGACTACAGAACTAAAGAACCCCAGGAGTTGGCATGGGGGACATTGGCACAACTTGCTTAATGCTGTTGTTGGATAA 1377 0.48 MAMFQPSCKRDGIEGQILDLDTAVKDGVLGGVDSGVVGTGVGEKLDLGKMIEELDLCEVPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFSLGHFTCPTTMQELWDDSITPNTTLYRLISTWFSQKYLVMKKRSEDVHGRVLELVETLKKVKGQARVLALKELHQVVAAHATARKALVDGDGVSVVSSLLGPFTSHAVGSEVIGVLVSLNLDCESKRNLLQPARVSLMVDILNEGSIETKINCTRLIETLIEGKDFHLEVFRSHSLLVGLMRLVKDKRHTNGICPGLKLLRTVCLHSEVKSLLVSIGAVSQLVELLSGLESECLELALSILDALASVPEGRLALKDCSNTIHVMVKLLMRVSENCTQYALSILWSVCKLAPEECSLIAVEAGLAAKLLLVIQSGCNPILKQQSAELLKLCRQERQRPATSQTTELKNPRSWHGGHWHNLLNAVVG* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01455 458 PANTHER WDSAM1 PROTEIN 54 428 IPR045185 GO:0061630
Lapu3g01455 458 Gene3D - 142 422 IPR011989 -
Lapu3g01455 458 SMART Ubox_2 62 125 IPR003613 GO:0004842|GO:0016567
Lapu3g01455 458 Pfam U-box domain 59 129 IPR003613 GO:0004842|GO:0016567
Lapu3g01455 458 CDD RING-Ubox_PUB 60 110 IPR045210 -
Lapu3g01455 458 ProSiteProfiles U-box domain profile. 58 132 IPR003613 GO:0004842|GO:0016567
Lapu3g01455 458 SUPERFAMILY RING/U-box 53 129 - -
Lapu3g01455 458 SUPERFAMILY ARM repeat 229 423 IPR016024 -
Lapu3g01455 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 140 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01455 Lapu-Chr3 16738164 16740826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01455 1 423 U-box Gene Family AT3G49810 70.465 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01455 - - gmx:100781741 699.893