Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01443 ATGGGGAGAGCTCCTTGTTGTGACAAAGCCAACGTGAAGAGAGGCCCATGGTCGCCTGAAGAAGACGCCAAACTCAAATCTTACATCGAAGAGCAGGGCACAGGTGGCAACTGGATAGCTTTGCCCCAGAAAATAGGTCTGAAAAGGTGCGGCAAAAGCTGTCGTCTCAGATGGCTGAACTATCTTCGCCCGAACATCAAACACGGCGGTTTCTCAGAAGAAGAAGACAACATAATTTGCAGCCTCTATGTTAACATTGGAAGCAGGTGGTCAATTATAGCAGCCCAATTACCAGGGCGCACGGATAATGACATAAAGAACTATTGGAACACTAAGCTGAAGAAAAAGCTATTGGGGAAGCAAAGGAAGGAGCAAAACGCTCAAGCTCGGAGAGTTGGTGGCCTAAAGCAAGAGATCAAGAGAGAGAGTGAAGATTTGATATTACCTGTGGAAGTTATTAGCCGGACTCCCTATTGGCCACATGAACAGAATTCTTGGCCCATTGCAGTGGCCAATGCTTGCACCCAATATGCTGAACCCAACCATCAAACATCATCCATCATACACTTCCCTAACAACACAGTCACTGCCACCATGAACTCGCAATACTCATCATTTGACGTTTCCTTAACACAAGACCAGCTATATCCCTCCACAGTGAACATGATAACCACGGACTCGTGTCACACATCAAATGCGTTTCAAGGGTTTGAGAACTTCTCCAGTGATTTGGCCTGTGTGAACCCGCAACAAATAGATAGATCAAAACGGGTTTTTTATGGATTGGAGTCAATGGAAATCGCCAATGGTAGCACAAACACGACTTCAACGGAAAGCACTAGTTGGGGAGATATAAGCTCTTTGGTTTACCCGCCTTTGGTTTCTGAGTACGAAGCTTGCCAACAAAGAATAATGCCTCAAGATGTTACTTTCGAGGAGTCTGGTTACTTTGCGATGCAAACGCAATAA 969 0.4551 MGRAPCCDKANVKRGPWSPEEDAKLKSYIEEQGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGKQRKEQNAQARRVGGLKQEIKRESEDLILPVEVISRTPYWPHEQNSWPIAVANACTQYAEPNHQTSSIIHFPNNTVTATMNSQYSSFDVSLTQDQLYPSTVNMITTDSCHTSNAFQGFENFSSDLACVNPQQIDRSKRVFYGLESMEIANGSTNTTSTESTSWGDISSLVYPPLVSEYEACQQRIMPQDVTFEESGYFAMQTQ* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01443 322 SMART sant 13 64 IPR001005 -
Lapu3g01443 322 SMART sant 67 115 IPR001005 -
Lapu3g01443 322 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lapu3g01443 322 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lapu3g01443 322 PANTHER OS09G0431300 PROTEIN 1 277 - -
Lapu3g01443 322 CDD SANT 71 111 IPR001005 -
Lapu3g01443 322 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lapu3g01443 322 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lapu3g01443 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lapu3g01443 322 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lapu3g01443 322 FunFam Transcription factor RAX3 7 68 - -
Lapu3g01443 322 CDD SANT 16 62 IPR001005 -
Lapu3g01443 322 FunFam Transcription factor RAX3 70 145 - -
Lapu3g01443 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lapu3g01443 322 Gene3D - 70 142 - -
Lapu3g01443 322 Gene3D - 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01443 Lapu-Chr3 16523003 16524398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01443 1 290 MYB Transcription Factor Family AT3G49690 46.154 2.42e-86 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu3g01443 Myb_DNA-binding 3.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01443 K09422 - gmx:100792374 495.738