Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01428 ATGACCTCAATGGAGGAATCATGGACTAGTTGGCTGTGTGATATGGAACCAGATGATTACAGTTTCATCGGTCAATCAGACATAAAGGTGGAGGAAGTGAATGGAAGTTTAGCATGTCCTCATGATATAGCCACTGCATTAGAAGAGAACCCGCAGAGTTCATTTTCCACGGAGAGTCACTCTTCAGTGACTGAGAGTGGGATAGAAGAGAGGCCTTTGAAGTTACTCAAGACATGCACTTCAAACTCTGCAAAAACAGACCAACTCTTACAAAAGAAAGCTTCTACTCCCTGTTCCTATATTCTTTCCTTTGACAACACCAATCCACCGCCAACAAAGGTTGAATCGGCTATAAAGCCAGGAACCAAGGTTGCCAAACGTGAAACACCAAAACGTGTTACTCAGGAGAGCAAGAAAACGGGCTCATTAGCCAGATCTTCTCATCACACACAAGATCACATAATTGCTGAGAGAATGAGAAGAGAAAAAATTAGCCAGCAGTTCATAGCCCTCTCAGCCCTCATTCCAGACCTCAAAAAGATGGACAAGGTGTCTGTATTGGGGGAAGCTATAAGGTATGTGAAGGAGCTGAAGGAGCAAGTGAAAGTGATGGAGGAGCAGGGCAAAAGGAAAATCCAGGAACAGGTGAAGCGTGCGAAGAAATCTCATGTTTGTGCTGCTGCGGACGAGGATGTCTCAGACACTTCATCAAATTTCTGTGAGTTCGGAAATTCCGATGATCCCTCATCCAAAACAAATCTATCACTCCCAGAAGTAGAAGCACGGGTGTCAAAGAAGAATGTGCTGATTCGAATCCTCTGCGAGAAAGAAAAGGTAGCGCTGGTGAACATTTATAGAGAGGTAGAGAAACTTCATCTCTCAGTCATCAATAGCAGCGCCTTATCTTTTGGTTCCTCTGTTCTCGACACAACCATCGTAGCCGAGATGGAGGATGAATTCAACATGAGCCTGAAGGAACTGACTGGAAATCTGAGAGGAGGACTGATGCAATTTATGTAG 1020 0.4441 MTSMEESWTSWLCDMEPDDYSFIGQSDIKVEEVNGSLACPHDIATALEENPQSSFSTESHSSVTESGIEERPLKLLKTCTSNSAKTDQLLQKKASTPCSYILSFDNTNPPPTKVESAIKPGTKVAKRETPKRVTQESKKTGSLARSSHHTQDHIIAERMRREKISQQFIALSALIPDLKKMDKVSVLGEAIRYVKELKEQVKVMEEQGKRKIQEQVKRAKKSHVCAAADEDVSDTSSNFCEFGNSDDPSSKTNLSLPEVEARVSKKNVLIRILCEKEKVALVNIYREVEKLHLSVINSSALSFGSSVLDTTIVAEMEDEFNMSLKELTGNLRGGLMQFM* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01428 339 Coils Coil 187 214 - -
Lapu3g01428 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 214 IPR036638 GO:0046983
Lapu3g01428 339 SMART finulus 154 203 IPR011598 GO:0046983
Lapu3g01428 339 PANTHER BHLH TRANSCRIPTION FACTOR 53 338 - -
Lapu3g01428 339 MobiDBLite consensus disorder prediction 49 63 - -
Lapu3g01428 339 MobiDBLite consensus disorder prediction 49 68 - -
Lapu3g01428 339 Pfam Helix-loop-helix DNA-binding domain 152 197 IPR011598 GO:0046983
Lapu3g01428 339 MobiDBLite consensus disorder prediction 121 135 - -
Lapu3g01428 339 MobiDBLite consensus disorder prediction 121 151 - -
Lapu3g01428 339 Gene3D - 144 208 IPR036638 GO:0046983
Lapu3g01428 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 197 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01428 Lapu-Chr3 16249605 16250947 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01428 9 339 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.676 8.73e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu3g01428 HLH 3.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01428 - - gmx:100803386 471.855