Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g01427 ATGATGGAGGAATTAAACAAACCAATGGATGATGCATCAGCACCCAGCTGGTTATCTGATTTGGACATGGATGATTACAATTTATTTCCGGATGAGTGTGCCCTGAACTTGAACTTGTTTGATGACCAAGAGTTTCTATCACAAGACATTGCCAATGTCCTTGAAGAACAGACACAGACCCTGCAACAATCTCTGTCTTCGGAGTGCCCTTCCAAAACTGTGAGCAACTCATCCACCGATGAAACCAGTTTTGACTTTGAGAGACCAGCCAAGTTACTGAAAACGACAAGCAGTAGTTGCTGTAACTCTGACTCATCCACCATCACCAACAACCTCTCACCAAAACTTTCCCCATCCACATCCTTCTCCTCCTTTCAGTCTCAGATTCTCTCTTTCGACAACCCCAACTCTTCCCCTCCCAACACCGCCACCCAGTTTTACGGCTTTGACTTAAACCCAACGCAGAATGAAATGGTGTCAGTGTCAGTGCCCCAATTGACAAAATCACGGTTCCCAAATCAAACCCCAAAAGGGTCCTCAAAAAATCAGAACTTTGAAACAAAACCCTCACATGGTAAGAGATCTCCTGCTCACGCACAGGATCACATCATGGCCGAGAGGAAGCGAAGAGAGAAGCTCAGCCAGAGCTTCATTGCTCTGGCAGCTCTTGTTCCTGGCCTAAAGAAGATGGATAAGGCTTCTGTGTTGGGGGACGCTATCAAATATGTGAAGGATCTTAAAGAGCGTTTGACAGTGCTGGAAGAGCAGAACAAGAAAACAAGGGAAGAATCGGTGGTGGTCCTGAACAAACCAGACCTCTCTGGCGATGATGACTCTTCTTCATGTGATGAGAGCATTGATGCTGATAGTGTCAGTGACTCAATGTTTGAAGTAGAATCAAGAGTGTCAGGGAAGGAGATGCTGCTTCGGATCCACTGCCAGAAGCAAAAGGGTCTTCTCGTCAAATTACTGGCCGAGATTCAAAGAAATAACCTATTCGTTATTAATAGCAGCATCTTACCATTCGGTGATGCTATCCTTGACATTACCATAGTTGCTCAGATGGGAGAAAAGTACAATTTGACCACGAAGGAACTTGTCAAGAACCTACGCGTGGCGGCATATAAGATTATGTCATAA 1140 0.4509 MMEELNKPMDDASAPSWLSDLDMDDYNLFPDECALNLNLFDDQEFLSQDIANVLEEQTQTLQQSLSSECPSKTVSNSSTDETSFDFERPAKLLKTTSSSCCNSDSSTITNNLSPKLSPSTSFSSFQSQILSFDNPNSSPPNTATQFYGFDLNPTQNEMVSVSVPQLTKSRFPNQTPKGSSKNQNFETKPSHGKRSPAHAQDHIMAERKRREKLSQSFIALAALVPGLKKMDKASVLGDAIKYVKDLKERLTVLEEQNKKTREESVVVLNKPDLSGDDDSSSCDESIDADSVSDSMFEVESRVSGKEMLLRIHCQKQKGLLVKLLAEIQRNNLFVINSSILPFGDAILDITIVAQMGEKYNLTTKELVKNLRVAAYKIMS* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g01427 379 Pfam Helix-loop-helix DNA-binding domain 201 246 IPR011598 GO:0046983
Lapu3g01427 379 MobiDBLite consensus disorder prediction 63 82 - -
Lapu3g01427 379 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 202 264 IPR036638 GO:0046983
Lapu3g01427 379 MobiDBLite consensus disorder prediction 168 201 - -
Lapu3g01427 379 CDD bHLH_AtNAI1_like 198 270 - -
Lapu3g01427 379 SMART finulus 203 252 IPR011598 GO:0046983
Lapu3g01427 379 Gene3D - 190 264 IPR036638 GO:0046983
Lapu3g01427 379 MobiDBLite consensus disorder prediction 187 201 - -
Lapu3g01427 379 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 197 246 IPR011598 GO:0046983
Lapu3g01427 379 PANTHER BHLH TRANSCRIPTION FACTOR 57 375 - -
Lapu3g01427 379 Coils Coil 243 263 - -
Lapu3g01427 379 MobiDBLite consensus disorder prediction 168 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g01427 Lapu-Chr3 16217016 16219427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g01427 88 373 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.892 9.83e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu3g01427 HLH 4.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g01427 - - var:108333272 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g01427 3 16217016 16219427 Lapu3g01427 3 16217016 16219427 ECH